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High-Content Digital Microscopy enhances user comfort, data storage and analysis throughput, paving the way to new researches and medical diagnostics. A digital microscopy platform aims at capturing an image of a cover slip, at storing…
Bibliometric analysis is a critical tool for understanding the structure, dynamics, and impact of scientific research. Traditional methods often fall short in capturing the intricate relationships and evolving trends within scientific…
Integrating artificial intelligence (AI) into wireless channel modeling requires large, accurate, and physically consistent datasets derived from real measurements. Such datasets are essential for training and validating models that learn…
The study of physiology demonstrates that the form (shape)of anatomical structures dictates their functions, and analyzing the form of anatomies plays a crucial role in clinical research. Statistical shape modeling (SSM) is a widely used…
Psychiatric symptom identification on social media aims to infer fine-grained mental health symptoms from user-generated posts, allowing a detailed understanding of users' mental states. However, the construction of large-scale…
One of the most attractive features of R is its linear modeling capabilities. We describe a Python package, salmon, that brings the best of R's linear modeling functionality to Python in a Pythonic way -- by providing composable objects for…
Medical image segmentation has been traditionally approached by training or fine-tuning the entire model to cater to any new modality or dataset. However, this approach often requires tuning a large number of parameters during training.…
Microscopy is routinely used to image biological structures of interest. Due to imaging constraints, acquired images, also called as micrographs, are typically low-SNR and contain noise. Over the last few years, regression-based tasks like…
We present an open source Python 3 library aimed at practitioners of molecular simulation, especially Monte Carlo simulation. The aims of the library are to facilitate the generation of simulation data for a wide range of problems; and to…
The emergence of data-driven computational materials science offers unprecedented opportunities to explore complex material landscapes, complementing experimental research with the discovery of novel compounds. To enable these developments,…
This note describes a technical overview of UXsim, an open source macro/mesoscopic traffic simulator in pure Python programming language. UXsim is based on Kinematic Wave model (more specifically, mesoscopic version of Newell's simplified…
We present a computational framework for "painting" galaxies on top of the Dark Matter Halo/Sub-Halo hierarchy obtained from N-body simulations. The method we use is based on the sub-halo clustering and abundance matching (SCAM) scheme…
In this paper, we introduce PhotoHolmes, an open-source Python library designed to easily run and benchmark forgery detection methods on digital images. The library includes implementations of popular and state-of-the-art methods, dataset…
In endoscopy, many applications (e.g., surgical navigation) would benefit from a real-time method that can simultaneously track the endoscope and reconstruct the dense 3D geometry of the observed anatomy from a monocular endoscopic video.…
The field of medical image segmentation is hindered by the scarcity of large, publicly available annotated datasets. Not all datasets are made public for privacy reasons, and creating annotations for a large dataset is time-consuming and…
Raman spectroscopy is a non-destructive and label-free chemical analysis technique, which plays a key role in the analysis and discovery cycle of various branches of science. Nonetheless, progress in Raman spectroscopic analysis is still…
Sparse coding, which is the decomposition of a vector using only a few basis elements, is widely used in machine learning and image processing. The basis set, also called dictionary, is learned to adapt to specific data. This approach has…
We present an algorithm implemented in the astroalign Python module for image registration in astronomy. Our module does not rely on WCS information and instead matches 3-point asterisms (triangles) on the images to find the most accurate…
The use of Python is noticeably growing among the scientific community, and Astronomy is not an exception. The power of Python consists of being an extremely versatile high-level language, easy to program that combines both traditional…
PSALM is a powerful extension of the Large Multi-modal Model (LMM) to address the segmentation task challenges. To overcome the limitation of the LMM being limited to textual output, PSALM incorporates a mask decoder and a well-designed…