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Liquid Chromatography Mass Spectrometry (LC-MS) is an indispensable analytical technique in proteomics, metabolomics, and other life sciences. While OpenMS provides advanced open-source software for MS data analysis, its complexity can be…

Data pre-processing is a fundamental component in any data-driven application. With the increasing complexity of data processing operations and volume of data, Cylon, a distributed dataframe system, is developed to facilitate data…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-01-02 Kaiying Shan , Niranda Perera , Damitha Lenadora , Tianle Zhong , Arup Sarker , Supun Kamburugamuve , Thejaka Amila Kanewela , Chathura Widanage , Geoffrey Fox

HPC world is dominated by x86 ISA CPUs. This monoculture is not necessarily justified by best performance evaluation, but may inherit from e.g. SW related restrictions on the choice of HW platforms. To avoid running (further) into path…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-07-04 Oskar Schirmer

Designing a scientific software stack to meet the needs of the next-generation of mesh-based simulation demands, not only scalable and efficient mesh and data management on a wide range of platforms, but also an abstraction layer that makes…

Mathematical Software · Computer Science 2015-05-19 Michael Lange , Matthew G. Knepley , Gerard J. Gorman

Developing software to undertake complex, compute-intensive scientific processes requires a challenging combination of both specialist domain knowledge and software development skills to convert this knowledge into efficient code. As…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-09-05 Jeremy Cohen , Chris Cantwell , Neil Chue Hong , David Moxey , Malcolm Illingworth , Andrew Turner , John Darlington , Spencer Sherwin

Stringent latency requirements in advanced Internet of Things (IoT) applications as well as an increased load on cloud data centers have prompted a move towards a more decentralized approach, bringing storage and processing of IoT data…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-10-22 Koustabh Dolui , Csaba Kiraly

Power efficiency has recently become a major concern in the high-performance computing domain. HPC centers are provisioned by a power bound which impacts execution time. Naturally, a tradeoff arises between power efficiency and…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-10-28 Ramy Medhat , Borzoo Bonakdarpour , Sebastian Fischmeister

The beginning of the 21st century has seen many projects on distributed hash tables, both research and commercial. One of their aims has been to replace the first generation of file sharing software with scalable peer-to-peer architectures.…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-07-17 Kari Visala

We consider the standard broadcast setup with a single server broadcasting information to a number of clients, each of which contains local storage (called cache) of some size, which can store some parts of the available files at the…

Information Theory · Computer Science 2023-02-08 Shailja Agrawal , K V Sushena Sree , Prasad Krishnan , Abhinav Vaishya , Srikar Kale

Redundant transfer of resources is a critical issue for compromising the performance of mobile Web applications (a.k.a., apps) in terms of data traffic, load time, and even energy consumption. Evidence shows that the current cache…

Software Engineering · Computer Science 2016-12-12 Xuanzhe Liu , Yun Ma , Shuailiang Dong , Yunxin Liu , Tao Xie , Gang Huang , Hong Mei

Efficient inventory management is crucial for both small and large enterprises to optimize operational workflows and reduce overhead costs. This paper explores the development and implementation of a Progressive Web Application (PWA)…

Software Engineering · Computer Science 2025-06-16 Abhi Desai

Containerisation demonstrates its efficiency in application deployment in cloud computing. Containers can encapsulate complex programs with their dependencies in isolated environments, hence are being adopted in HPC clusters. HPC workload…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-01-14 Naweiluo Zhou , Yiannis Georgiou , Li Zhong , Huan Zhou , Marcin Pospieszny

Message logging protocols are enablers of local rollback, a more efficient alternative to global rollback, for fault tolerant MPI applications. Until now, message logging MPI implementations have incurred the overheads of a redesign and…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-05-09 Kiril Dichev , Dimitrios S. Nikolopoulos

Balancing the workload of sophisticated simulations is inherently difficult, since we have to balance both computational workload and memory footprint over meshes that can change any time or yield unpredictable cost per mesh entity, while…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-08-04 Philipp Samfass , Tobias Weinzierl , Dominic E. Charrier , Michael Bader

Use of standards-based workflows is still somewhat unusual by high-performance computing users. In this paper we describe the experience of using the Common Workflow Language (CWL) standards to describe the execution, in parallel, of…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-11-25 Rupert W. Nash , Nick Brown , Michael R. Crusoe , Max Kontak

The openPC is a set of open source tools that realizes a parallel machine and distributed computing environment divisible into several independent blocks of nodes, and each of them is remotely but fully in any means accessible for users…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-06-18 Z. Akbar , I. Firmansyah , B. Hermanto , L. T. Handoko

This paper describes a new benchmark tool, Spatter, for assessing memory system architectures in the context of a specific category of indexed accesses known as gather and scatter. These types of operations are increasingly used to express…

Performance · Computer Science 2020-07-09 Patrick Lavin , Jeffrey Young , Jason Riedy , Richard Vuduc , Aaron Vose , Dan Ernst

HPC systems face security and compliance challenges, particularly in preventing waste and misuse of computational resources by unauthorized or malicious software that deviates from allocation purpose. Existing methods to classify…

Cryptography and Security · Computer Science 2024-11-28 Thomas Jakobsche , Florina M. Ciorba

Recent advancements in fields such as automotive and aerospace have driven a growing demand for robust computational resources. Applications that were once designed for basic MCUs are now deployed on highly heterogeneous SoC platforms.…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-02-05 Afonso Oliveira , Diogo Costa , Gonçalo Moreira , José Martins , Sandro Pinto

Linux containers have gained high popularity in recent times. This popularity is significantly due to various advantages of containers over Virtual Machines (VM). The containers are lightweight, occupy lesser storage, have fast boot-up…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-09-21 Akshay Dhumal , Dharanipragada Janakiram
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