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In drug discovery, molecular docking is the task in charge of estimating the position of a molecule when interacting with the docking site. This task is usually used to perform screening of a large library of molecules, in the early phase…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-01-21 Emanuele Vitali , Davide Gadioli , Gianluca Palermo , Andrea Beccari , Carlo Cavazzoni , Cristina Silvano

The end of Dennard scaling and the slowdown of Moore's law led to a shift in technology trends toward parallel architectures, particularly in HPC systems. To continue providing performance benefits, HPC should embrace Approximate Computing…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-09-01 Zane Fink , Konstantinos Parasyris , Giorgis Georgakoudis , Harshitha Menon

As core counts and heterogeneity rise in HPC, traditional hybrid programming models face challenges in managing distributed GPU memory and ensuring portability. This paper presents DiOMP, a distributed OpenMP framework that unifies OpenMP…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-20 Baodi Shan , Mauricio Araya-Polo , Barbara Chapman

Various kinds of applications take advantage of GPUs through automation tools that attempt to automatically exploit the available performance of the GPU's parallel architecture. Directive-based programming models, such as OpenACC, are one…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-01-30 Kazuaki Matsumura , Simon Garcia De Gonzalo , Antonio J. Peña

Model Predictive Control (MPC) is a powerful technique to control nonlinear, multi-input multi-output systems subject to input and state constraints. It is now a standard tool for trajectory tracking control of automated vehicles. As such…

Systems and Control · Electrical Eng. & Systems 2025-08-20 Georg Schildbach , Jasper Pflughaupt

OpenMP is a shared memory programming model which supports the offloading of target regions to accelerators such as NVIDIA GPUs. The implementation in Clang/LLVM aims to deliver a generic GPU compilation toolchain that supports both the…

Accelerated computing is widely used in high-performance computing. Therefore, it is crucial to experiment and discover how to better utilize GPUGPUs latest generations on relevant applications. In this paper, we present results and share…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-13 Baodi Shan , Mauricio Araya-Polo

The electrical and electronic engineering has used parallel programming to solve its large scale complex problems for performance reasons. However, as parallel programming requires a non-trivial distribution of tasks and data, developers…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-07-05 Antonio Wendell De Oliveira Rodrigues , Frédéric Guyomarc'H , Jean-Luc Dekeyser , Yvonnick Le Menach

We evaluate AI-assisted generative capabilities on fundamental numerical kernels in high-performance computing (HPC), including AXPY, GEMV, GEMM, SpMV, Jacobi Stencil, and CG. We test the generated kernel codes for a variety of…

Artificial Intelligence · Computer Science 2023-09-20 William F. Godoy , Pedro Valero-Lara , Keita Teranishi , Prasanna Balaprakash , Jeffrey S. Vetter

These lecture notes are designed to accompany an imaginary, virtual, undergraduate, one or two semester course on fundamentals of Parallel Computing as well as to serve as background and reference for graduate courses on High-Performance…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-02 Jesper Larsson Träff

We present OMP2HMPP, a tool that, in a first step, automatically translates OpenMP code into various possible transformations of HMPP. In a second step OMP2HMPP executes all variants to obtain the performance and power consumption of each…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-06-10 Albert Saà-Garriga , David Castells-Rufas , Jordi Carrabina

Despite the various research initiatives and proposed programming models, efficient solutions for parallel programming in HPC clusters still rely on a complex combination of different programming models (e.g., OpenMP and MPI), languages…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-08-16 Hervé Yviquel , Marcio Pereira , Emílio Francesquini , Guilherme Valarini , Gustavo Leite , Pedro Rosso , Rodrigo Ceccato , Carla Cusihualpa , Vitoria Dias , Sandro Rigo , Alan Souza , Guido Araujo

The rapid growth of deep learning has driven exponential increases in model parameters and computational demands. NVIDIA GPUs and their CUDA-based software ecosystem provide robust support for parallel computing, significantly alleviating…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-08 Jiaqi Lv , Xufeng He , Yanchen Liu , Xu Dai , Aocheng Shen , Yinghao Li , Jiachen Hao , Jianrong Ding , Yang Hu , Shouyi Yin

In recent years, with the slowing down of Moore's law, utilization of hardware other than CPU such as GPU or FPGA is increasing. However, when using heterogeneous hardware other than CPUs, barriers of technical skills such as CUDA and HDL…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-02-28 Yoji Yamato

The rapid development in computing technology has paved the way for directive-based programming models towards a principal role in maintaining software portability of performance-critical applications. Efforts on such models involve a least…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-04-28 Kazuaki Matsumura , Simon Garcia De Gonzalo , Antonio J. Peña

Portability is critical to ensuring high productivity in developing and maintaining scientific software as the diversity in on-node hardware architectures increases. While several programming models provide portability for diverse GPU…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-08 Joshua H. Davis , Pranav Sivaraman , Joy Kitson , Konstantinos Parasyris , Harshitha Menon , Isaac Minn , Giorgis Georgakoudis , Abhinav Bhatele

We present a framework based on Catch2 to evaluate performance of OpenMP's target offload model via micro-benchmarks. The compilers supporting OpenMP's target offload model for heterogeneous architectures are currently undergoing rapid…

Performance · Computer Science 2025-03-04 Mohammad Atif , Tianle Wang , Zhihua Dong , Charles Leggett , Meifeng Lin

We describe a universal modeling approach for predicting single- and multicore runtime of steady-state loops on server processors. To this end we strictly differentiate between application and machine models: An application model comprises…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-09-30 Johannes Hofmann , Christie L. Alappat , Georg Hager , Dietmar Fey , Gerhard Wellein

Asynchronous Many-task (AMT) runtime systems have gained increasing acceptance in the HPC community due to the performance improvements offered by fine-grained tasking runtime systems. At the same time, C++ standardization efforts are…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-07-09 Tianyi Zhang , Shahrzad Shirzad , Patrick Diehl , R. Tohid , Weile Wei , Hartmut Kaiser

One of the barriers to the adoption of parallel computing is the inherent complexity of its programming. The Open Multi-Processing (OpenMP) Application Programming Interface (API) facilitates such implementations, providing high abstraction…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-07-21 Reinaldo Agostinho de Souza Filho , Diego V. Cirilo do Nascimento , Samuel Xavier-de-Souza