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Following [21, 23], the present work investigates a new relative entropy-regularized algorithm for solving the optimal transport on a graph problem within the randomized shortest paths formalism. More precisely, a unit flow is injected into…

Machine Learning · Computer Science 2021-09-21 Sylvain Courtain , Guillaume Guex , Ilkka Kivimaki , Marco Saerens

Diffusion-based generative models represent a forefront direction in generative AI research today. Recent studies in physics have suggested that the renormalization group (RG) can be conceptualized as a diffusion process. This insight…

Disordered Systems and Neural Networks · Physics 2024-03-04 Artan Sheshmani , Yi-Zhuang You , Baturalp Buyukates , Amir Ziashahabi , Salman Avestimehr

We consider moving particles in media with nonlinear friction and drive them by an asymmetric dichotomic Markov process. Due to different energy dissipations, during the forward and backward stroke, we obtain a mean non-vanishing directed…

Statistical Mechanics · Physics 2011-05-18 Gökan Cebiroglu , Christian Weber , Lutz Schimansky-Geier

Computational modeling of the brain has become a key part of understanding how the brain clears metabolic waste, but patient-specific modeling on a significant scale is still out of reach with current methods. We introduce a novel approach…

Quantitative Methods · Quantitative Biology 2025-06-12 Andreas Solheim , Geir Ringstand , Per Kristian Eide , Kent-Andre Mardal

In this work, a unified representation of all the time-varying dynamics is accomplished with a Lagrangian framework for analyzing Fisher-Rao regularized dynamical optimal mass transport (OMT) derived flows. While formally equivalent to the…

Fluid Dynamics · Physics 2020-05-21 Rena Elkin , Saad Nadeem , Hedok Lee , Helene Benveniste , Allen Tannenbaum

Anisotropic Non-Linear Diffusion is a powerful image processing technique, which allows to simultaneously remove the noise and enhance sharp features in two or three dimensional images. Anisotropic Diffusion is understood here in the sense…

Computer Vision and Pattern Recognition · Computer Science 2015-03-04 Jean-Marie Mirebeau , Jérôme Fehrenbach , Laurent Risser , Shaza Tobji

We propose a novel neural algorithm for the fundamental problem of computing the entropic optimal transport (EOT) plan between continuous probability distributions which are accessible by samples. Our algorithm is based on the saddle point…

Machine Learning · Computer Science 2023-11-02 Nikita Gushchin , Alexander Kolesov , Alexander Korotin , Dmitry Vetrov , Evgeny Burnaev

This paper proposes an image-based robot motion planning method using a one-step diffusion model. While the diffusion model allows for high-quality motion generation, its computational cost is too expensive to control a robot in real time.…

Robotics · Computer Science 2025-04-29 Tomoharu Aizu , Takeru Oba , Yuki Kondo , Norimichi Ukita

We consider the homogenization of a model of reactive flows through periodic porous media involving a single solute which can be absorbed and desorbed on the pore boundaries. This is a system of two convection-diffusion equations, one in…

Analysis of PDEs · Mathematics 2014-12-30 Grégoire Allaire , Harsha Hutridurga

This article introduces a generalization of the discrete optimal transport, with applications to color image manipulations. This new formulation includes a relaxation of the mass conservation constraint and a regularization term. These two…

Computer Vision and Pattern Recognition · Computer Science 2013-07-23 Sira Ferradans , Nicolas Papadakis , Gabriel Peyré , Jean-François Aujol

Training data are usually limited or heterogeneous in many chemical and biological applications. Existing machine learning models for chemistry and materials science fail to consider generalizing beyond training domains. In this article, we…

Machine Learning · Computer Science 2023-10-31 Fang Wu , Nicolas Courty , Shuting Jin , Stan Z. Li

We systematically present a new approach for studying the coupled linear transport of holographic systems. In this approach, the set of equations for the linear perturbations can be reduced to a first-order nonlinear ordinary differential…

High Energy Physics - Theory · Physics 2017-08-30 Yu Tian , Xian-Hui Ge , Shao-Feng Wu

The Ronen method (RM) demands for successive resolutions of the diffusion equation where local diffusion constants are modified to reproduce more accurate estimates of the currents by a transport operator. The methodology is currently…

Computational Physics · Physics 2023-09-15 Johan Cufe , Daniele Tomatis , Erez Gilad

The purpose of this study is to present and compare three denoising diffusion probabilistic models (DDPMs) that generate 3D $T_1$-weighted MRI human brain images. Three DDPMs were trained using 80,675 image volumes from 42,406 subjects…

Image and Video Processing · Electrical Eng. & Systems 2025-11-03 Samuel W. Remedios , Aaron Carass , Jerry L. Prince , Blake E. Dewey

Diffusion models have shown remarkable performance on many generative tasks. Despite recent success, most diffusion models are restricted in that they only allow linear transformation of the data distribution. In contrast, broader family of…

Machine Learning · Computer Science 2024-06-04 Grigory Bartosh , Dmitry Vetrov , Christian A. Naesseth

We suggest to utilize the rich information content about microstructural tissue properties entangled in asymmetric balanced steady-state free precession (bSSFP) profiles to estimate multiple diffusion metrics simultaneously by neural…

Advection-diffusion equations describe a large family of natural transport processes, e.g., fluid flow, heat transfer, and wind transport. They are also used for optical flow and perfusion imaging computations. We develop a machine learning…

Computer Vision and Pattern Recognition · Computer Science 2022-03-30 Peirong Liu , Yueh Lee , Stephen Aylward , Marc Niethammer

We present a numerical method to solve the optimal transport problem with a quadratic cost when the source and target measures are periodic probability densities. This method is based on a numerical resolution of the corresponding…

Numerical Analysis · Mathematics 2011-03-02 Louis-Philippe Saumier , Martial Agueh , Boualem Khouider

We propose and analyze an optimal mass transport method for a random genetic drift problem driven by a Moran process under weak-selection. The continuum limit, formulated as a reaction-advection-diffusion equation known as the Kimura…

Analysis of PDEs · Mathematics 2021-01-01 José A. Carrillo , Lin Chen , Qi Wang

We present a method to infer the arbitrary space-dependent drift and diffusion of a nonlinear stochastic model driven by multiplicative fractional Gaussian noise from a single trajectory. Our method, fractional Onsager-Machlup optimisation…

Adaptation and Self-Organizing Systems · Physics 2023-11-07 Johannes A. Kassel , Benjamin Walter , Holger Kantz