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The Message Passing Interface (MPI) is the de facto standard message-passing infrastructure for developing parallel applications. Two decades after the first version of the library specification, MPI-based applications are nowadays…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-12-11 Eduardo R. B. Marques , Francisco Martins , Vasco T. Vasconcelos , Nicholas Ng , Nuno Martins

Summary: MALDIquant is an R package providing a complete and modular analysis pipeline for quantitative analysis of mass spectrometry data. MALDIquant is specifically designed with application in clinical diagnostics in mind and implements…

Genomics · Quantitative Biology 2012-08-30 Sebastian Gibb , Korbinian Strimmer

This paper presents an R package to handle and represent measurements with errors in a very simple way. We briefly introduce the main concepts of metrology and propagation of uncertainty, and discuss related R packages. Building upon this,…

Computation · Statistics 2019-08-02 Iñaki Ucar , Edzer Pebesma , Arturo Azcorra

We formulate a new variant of the private information retrieval (PIR) problem where the user is pliable, i.e., interested in any message from a desired subset of the available dataset, denoted as pliable private information retrieval…

Information Theory · Computer Science 2022-06-14 Sarah A. Obead , Jörg Kliewer

I present an R package called edibble that facilitates the design of experiments by encapsulating elements of the experiment in a series of composable functions. This package is an interpretation of "the grammar of experimental designs" by…

Computation · Statistics 2023-11-17 Emi Tanaka

With the generalization of mobile communication systems, solicitations of all kinds in the form of messages and emails are received by users with increasing proportion of malicious ones. They are customized to pass anti-spam filters and ask…

Cryptography and Security · Computer Science 2017-06-30 P-Y. Cousin , V. Bernard , A. Lefaillet , M. Mugaruka , C. Raibaud

The static properties of code repositories, e.g., lines of code, dependents, dependencies, etc. can be readily scraped from code hosting platforms such as GitHub, and from package management systems such as npm for JavaScript; Although no…

Software Engineering · Computer Science 2022-03-31 Ellen Arteca , Alexi Turcotte

The purpose of this paper is to serve as a reference guide for the development of chatterbots implemented with the AIML language. In order to achieve this, the main concepts in Pattern Recognition area are described because the AIML uses…

Mixed data arise when observations are described by a mixture of numerical and categorical variables. The R package PCAmixdata extends to this type of data standard multivariate analysis methods which allow description, exploration and…

Computation · Statistics 2022-10-25 Marie Chavent , Vanessa Kuentz-Simonet , Amaury Labenne , Jérôme Saracco

Composability is one of seven reasons for the long-standing and continuing success of MPI. Extending MPI by composing its operations with user-level operations provides useful integration with the progress engine and completion notification…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-09-27 Derek Schafer , Sheikh Ghafoor , Daniel Holmes , Martin Ruefenacht , Anthony Skjellum

We introduce an R package for fitting Stable Isotope Mixing Models (SIMMs) via both Markov chain Monte Carlo and Variational Bayes. The package is mainly used for estimating dietary contributions from food sources taken via measurements of…

Applications · Statistics 2023-06-14 Emma Govan , Andrew L. Jackson , Richard Inger , Stuart Bearhop , Andrew C. Parnell

An R package SpatialPack that implements routines to compute point estimators and perform hypothesis testing of the spatial association between two stochastic sequences is introduced. These methods address the spatial association between…

Applications · Statistics 2016-11-17 Felipe Osorio , Ronny Vallejos , Francisco Cuevas

In the present paper, we propose a broadcast ARQ protocol based on the concept of index coding. In the proposed scenario, a server wishes to transmit a finite sequence of packets to multiple receivers via a broadcast channel with packet…

Information Theory · Computer Science 2015-04-01 Takahiro Oshima , Tadashi Wadayama

We are moving toward a distributed, international, twenty-four hour, electronic stock exchange. The exchange will use the global Internet, or internet technology. This system is a natural application of multicast because there are a large…

Networking and Internet Architecture · Computer Science 2007-05-23 N. F. Maxemchuk , D. H. Shur

We present a comprehensive characterization study of open-source message-oriented middleware (MOM) systems. We followed a rigorous methodology to select and study ten popular and diverse MOM systems. For each system, we examine 42 features…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-02-23 Wael Al-Manasrah , Zuhair AlSader , Tim Brecht , Ahmed Alquraan , Samer Al-Kiswany

We describe the \proglang{R} package \pkg{glmmrBase} and an extension \pkg{glmmrOptim}. \pkg{glmmrBase} provides a flexible approach to specifying, fitting, and analysing generalised linear mixed models. We use an object-orientated class…

Computation · Statistics 2024-03-15 Samuel I. Watson

The secure and robust functioning of a network relies on the defect-free implementation of network applications. As network protocols have become increasingly complex, however, hand-writing network message processing code has become…

Programming Languages · Computer Science 2007-05-23 Burgy Laurent , Laurent Réveillère , Julia Lawall , Gilles Muller

Feature Selection (FS) is a key task in Machine Learning. It consists in selecting a number of relevant variables for the model construction or data analysis. We present the R package, FSinR, which implements a variety of widely known…

Machine Learning · Computer Science 2020-02-25 F. Aragón-Royón , A. Jiménez-Vílchez , A. Arauzo-Azofra , J. M. Benítez

Remote Direct Memory Access (RDMA) is an efficient way to improve the performance of traditional client-server systems. Currently, there are two main design paradigms for RDMA-accelerated systems. The first allows the clients to directly…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-12-25 Maomeng Su , Mingxing Zhang , Kang Chen , Yongwei Wu , Guoliang Li

The advent of large language models (LLMs) has significantly propelled the advancement of Role-Playing Agents (RPAs). However, current Role-Playing Agents predominantly focus on mimicking a character's fundamental attributes while…

Computation and Language · Computer Science 2024-11-06 Siyuan Chen , Qingyi Si , Chenxu Yang , Yunzhi Liang , Zheng Lin , Huan Liu , Weiping Wang