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Summary: R and Matlab are two high-level scientific programming languages which are frequently applied in computational biology. To extend the wide variety of available and approved implementations, we present the Rcall interface which runs…

Programming Languages · Computer Science 2021-06-16 Janine Egert , Clemens Kreutz

The brms package allows R users to easily specify a wide range of Bayesian single-level and multilevel models, which are fitted with the probabilistic programming language Stan behind the scenes. Several response distributions are…

Computation · Statistics 2017-10-17 Paul-Christian Bürkner

MPAgenomics, standing for multi-patients analysis (MPA) of genomic markers, is an R-package devoted to: (i) efficient segmentation, and (ii) genomic marker selection from multi-patient copy number and SNP data profiles. It provides wrappers…

Quantitative Methods · Quantitative Biology 2014-01-21 Quentin Grimonprez , Alain Celisse , Meyling Cheok , Martin Figeac , Guillemette Marot

This paper addresses the problem of inferring a regular expression from a given set of strings that resembles, as closely as possible, the regular expression that a human expert would have written to identify the language. This is motivated…

Machine Learning · Computer Science 2012-06-22 Paul Prasse , Christoph Sawade , Niels Landwehr , Tobias Scheffer

MP net is a formal model specifically designed for the field of parallel applications that use a message passing interface. The main idea is to use MP net as a comprehensible way of presenting the actual structure of communication within…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-04-01 Martin Šurkovský

Summary: ipd is an open-source R software package for the downstream modeling of an outcome and its associated features where a potentially sizable portion of the outcome data has been imputed by an artificial intelligence or machine…

Private Information Retrieval (PIR) is a fundamental problem in the broader fields of security and privacy. In recent years, the problem has garnered significant attention from the research community, leading to achievability schemes and…

Information Theory · Computer Science 2025-02-21 Ningze Wang , Anoosheh Heidarzadeh , Alex Sprintson

The increasing availability of cloud computing and scientific super computers brings great potential for making R accessible through public or shared resources. This allows us to efficiently run code requiring lots of cycles and memory, or…

Cryptography and Security · Computer Science 2014-02-05 Jeroen Ooms

MMS (Multimedia Messaging Service) is the next generation of messaging services in multimedia mobile communications. MMS enables messaging with full multimedia content including images, audios, videos, texts and data, from client to client…

Multimedia · Computer Science 2014-03-18 A. A. Milani , Reza Rahimi

International LOFAR stations are powerful radio telescopes, however they are delivered without the tooling necessary to convert their raw data stream into standard data formats that can be used by common processing pipelines, or…

Instrumentation and Methods for Astrophysics · Physics 2023-09-08 David J. McKenna , Evan F. Keane , Peter T. Gallagher , Joe McCauley

Manifold optimization appears in a wide variety of computational problems in the applied sciences. In recent statistical methodologies such as sufficient dimension reduction and regression envelopes, estimation relies on the optimization of…

Computation · Statistics 2016-12-28 Sean Martin , Andrew M. Raim , Wen Huang , Kofi P. Adragni

People have shown that in-network computation (INC) significantly boosts performance in many application scenarios include distributed training, MapReduce, agreement, and network monitoring. However, existing INC programming is unfriendly…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-12-19 Bohan Zhao , Wenfei Wu , Wei Xu

Modern radar systems have high requirements in terms of accuracy, robustness and real-time capability when operating on increasingly complex electromagnetic environments. Traditional radar signal processing (RSP) methods have shown some…

Signal Processing · Electrical Eng. & Systems 2020-09-30 Ping Lang , Xiongjun Fu , Marco Martorella , Jian Dong , Rui Qin , Xianpeng Meng , Min Xie

What is your messaging data used for? While many users do not often think about the information companies can gather based off of their messaging platform of choice, it is nonetheless important to consider as society increasingly relies on…

Computation and Language · Computer Science 2025-12-15 Alan Gerber , Sam Cooperman

CONTEXT The R programming language has a huge and active community, especially in the area of statistical computing. Its interpreted nature allows for several interesting constructs, like the manipulation of functions at run-time, that…

Programming Languages · Computer Science 2024-01-30 Florian Sihler , Lukas Pietzschmann , Raphael Straub , Matthias Tichy , Andor Diera , Abdelhalim Dahou

Contemporary software projects often utilize a README.md to share crucial information such as installation and usage examples related to their software. Furthermore, these files serve as an important source of updated and useful…

Software Engineering · Computer Science 2018-02-28 Shohei Ikeda , Akinori Ihara , Raula Gaikovina Kula , Kenichi Matsumoto

This paper presents maplet, an open-source R package for the creation of highly customizable, fully reproducible statistical pipelines for omics data analysis, with a special focus on metabolomics-based methods. It builds on the…

NeXML is a powerful and extensible exchange standard recently proposed to better meet the expanding needs for phylogenetic data and metadata sharing. Here we present the RNeXML package, which provides users of the R programming language…

Quantitative Methods · Quantitative Biology 2015-06-10 Carl Boettiger , Scott Chamberlain , Rutger Vos , Hilmar Lapp

Providing access to information across languages has been a goal of Information Retrieval (IR) for decades. While progress has been made on Cross Language IR (CLIR) where queries are expressed in one language and documents in another, the…

Information Retrieval · Computer Science 2023-02-10 Dawn Lawrie , Eugene Yang , Douglas W. Oard , James Mayfield

In several applied fields, multimodality assessment is a crucial task as a previous exploratory tool or for determining the suitability of certain distributions. The goal of this paper is to present the utilities of the R package multimode,…

Computation · Statistics 2022-11-21 Jose Ameijeiras-Alonso , Rosa M. Crujeiras , Alberto Rodríguez-Casal