Related papers: TextDescriptives: A Python package for calculating…
relentless is an open-source Python package that enables the optimization of objective functions computed using molecular dynamics simulations. It has a high-level, extensible interface for model parametrization; setting up, running, and…
Localized Narratives is a dataset with detailed natural language descriptions of images paired with mouse traces that provide a sparse, fine-grained visual grounding for phrases. We propose TReCS, a sequential model that exploits this…
Summarizing data samples by quantitative measures has a long history, with descriptive statistics being a case in point. However, as natural language processing methods flourish, there are still insufficient characteristic metrics to…
In this paper, we present resolvent4py, a parallel Python package for the analysis, model reduction and control of large-scale linear systems with millions or billions of degrees of freedom. This package provides the user with a friendly…
Evaluating text-to-image generative models remains a challenge, despite the remarkable progress being made in their overall performances. While existing metrics like CLIPScore work for coarse evaluations, they lack the sensitivity to…
Mathematics has many useful properties for developing of complex software systems. One is that it can exactly describe a physical situation of the object or outcome of an action. Mathematics support abstraction and this is an excellent…
Despite recent advances in natural language processing, many statistical models for processing text perform extremely poorly under domain shift. Processing biomedical and clinical text is a critically important application area of natural…
The Information Dynamics Toolkit xl (IDTxl) is a comprehensive software package for efficient inference of networks and their node dynamics from multivariate time series data using information theory. IDTxl provides functionality to…
This work presents a new task of Text Expansion (TE), which aims to insert fine-grained modifiers into proper locations of the plain text to concretize or vivify human writings. Different from existing insertion-based writing assistance…
LLM_annotate is a Python package for analyzing the personality of fiction characters with large language models. It standardizes workflows for annotating character behaviors in full texts (e.g., books and movie scripts), inferring character…
Automated searches for strong gravitational lensing in optical imaging survey datasets often employ machine learning and deep learning approaches. These techniques require more example systems to train the algorithms than have presently…
Surveys are an important research tool, providing unique measurements on subjective experiences such as sentiment and opinions that cannot be measured by other means. However, because survey data is collected from a self-selected group of…
Monitoring progress on the United Nations Sustainable Development Goals (SDGs) is important for both academic and non-academic organizations. Existing approaches to monitoring SDGs have focused on specific data types; namely, publications…
ruptures is a Python library for offline change point detection. This package provides methods for the analysis and segmentation of non-stationary signals. Implemented algorithms include exact and approximate detection for various…
Story visualization aims to generate coherent image sequences that faithfully represent a narrative and match given character references. Despite progress in generative models, existing benchmarks remain narrow in scope, often limited to…
fgivenx is a Python package for functional posterior plotting, currently used in astronomy, but will be of use to scientists performing any Bayesian analysis which has predictive posteriors that are functions. The source code for fgivenx is…
Multiplexed imaging data are revolutionizing our understanding of the composition and organization of tissues and tumors. A critical aspect of such tissue profiling is quantifying the spatial relationship relationships among cells at…
FCMpy is an open source package in Python for building and analyzing Fuzzy Cognitive Maps. More specifically, the package allows 1) deriving fuzzy causal weights from qualitative data, 2) simulating the system behavior, 3) applying machine…
We present Decapodes, a diagrammatic tool for representing, composing, and solving partial differential equations. Decapodes provides an intuitive diagrammatic representation of the relationships between variables in a system of equations,…
Mechanistic models are important tools to describe and understand biological processes. However, they typically rely on unknown parameters, the estimation of which can be challenging for large and complex systems. We present pyPESTO, a…