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Biclustering is a data mining technique which searches for local patterns in numeric tabular data with main application in bioinformatics. This technique has shown promise in multiple areas, including development of biomarkers for cancer,…

Machine Learning · Computer Science 2021-05-05 Paweł Renc , Patryk Orzechowski , Aleksander Byrski , Jarosław Wąs , Jason H. Moore

We present the Julia package PauliStrings ( https://github.com/nicolasloizeau/PauliStrings.jl ) for quantum many-body simulations, which performs fast operations on the Pauli group by encoding Pauli strings in binary. All of the Pauli…

Quantum Physics · Physics 2025-03-26 Nicolas Loizeau , J. Clayton Peacock , Dries Sels

We introduce ACEpotentials.jl, a Julia-language software package that constructs interatomic potentials from quantum mechanical reference data using the Atomic Cluster Expansion (Drautz, 2019). As the latter provides a complete description…

We present SubTropica, a Mathematica package that performs symbolic integration of multi-polylogarithmic integrals using recent advances in tropical geometry. It focuses on the class of linearly-reducible Euler integrals, such as Feynman…

High Energy Physics - Theory · Physics 2026-04-24 Mathieu Giroux , Sebastian Mizera , Giulio Salvatori

As mathematical computing becomes more democratized in high-level languages, high-performance symbolic-numeric systems are necessary for domain scientists and engineers to get the best performance out of their machine without deep knowledge…

Computation and Language · Computer Science 2022-02-08 Shashi Gowda , Yingbo Ma , Alessandro Cheli , Maja Gwozdz , Viral B. Shah , Alan Edelman , Christopher Rackauckas

In this paper, we address the problem of designing a distributed application meant to run both classical and asynchronous iterations. MPI libraries are very popular and widely used in the scientific community, however asynchronous iterative…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-07-01 Guillaume Gbikpi-Benissan , Frederic Magoules

Dynamic programming languages face semantic and performance challenges in the presence of features, such as eval, that can inject new code into a running program. The Julia programming language introduces the novel concept of world age to…

Programming Languages · Computer Science 2020-10-19 Julia Belyakova , Benjamin Chung , Jack Gelinas , Jameson Nash , Ross Tate , Jan Vitek

We present the Julia package SagbiHomotopy.jl for solving systems of polynomial equations using numerical homotopy continuation. The package introduces an optimal choice of a start system based on SAGBI homotopies. For square horizontally…

Algebraic Geometry · Mathematics 2025-06-09 Barbara Betti , Viktoriia Borovik

The large amount of cosmological data already available (and in the near future) makes necessary the development of efficient numerical codes. Many software products have been implemented to perform cosmological analyses considering one or…

Cosmology and Nongalactic Astrophysics · Physics 2022-03-16 Sandro Dias Pinto Vitenti , Mariana Penna-Lima

This paper describes open-source scientific contributions in python surrounding the numerical solutions to hyperbolic Hamilton-Jacobi (HJ) partial differential equations viz., their implicit representation on co-dimension one surfaces;…

Mathematical Software · Computer Science 2024-11-07 Lekan Molu

We present a Julia package, DisjunctiveProgramming.jl, that extends the functionality in JuMP.jl to allow modeling problems via logical propositions and disjunctive constraints. Such models can then be reformulated into Mixed-Integer…

Logic in Computer Science · Computer Science 2023-04-21 Hector D. Perez , Shivank Joshi , Ignacio E. Grossmann

Hyperbolic spaces have recently gained momentum in the context of machine learning due to their high capacity and tree-likeliness properties. However, the representational power of hyperbolic geometry is not yet on par with Euclidean…

Machine Learning · Computer Science 2018-06-29 Octavian-Eugen Ganea , Gary Bécigneul , Thomas Hofmann

We provide a general discussion of Smolyak's algorithm for the acceleration of scientific computations. The algorithm first appeared in Smolyak's work on multidimensional integration and interpolation. Since then, it has been generalized in…

Numerical Analysis · Mathematics 2018-07-17 Raul Tempone , Soeren Wolfers

Why does quantum theory need the complex numbers? With a view toward answering this question, this paper argues that the usual Hilbert-space formalism is a special case of the general method of Markovian embeddings. This paper then…

Quantum Physics · Physics 2026-02-03 Jacob A. Barandes

Metric learning aims to learn a highly discriminative model encouraging the embeddings of similar classes to be close in the chosen metrics and pushed apart for dissimilar ones. The common recipe is to use an encoder to extract embeddings…

Computer Vision and Pattern Recognition · Computer Science 2022-03-23 Aleksandr Ermolov , Leyla Mirvakhabova , Valentin Khrulkov , Nicu Sebe , Ivan Oseledets

Satisfiability modulo theories (SMT) is a core tool in formal verification. While the SMT-LIB specification language can be used to interact with theorem proving software, a high-level interface allows for faster and easier specifications…

Logic in Computer Science · Computer Science 2024-12-05 Emiko Soroka , Mykel J. Kochenderfer , Sanjay Lall

Embedding into hyperbolic space is emerging as an effective representation technique for datasets that exhibit hierarchical structure. This development motivates the need for algorithms that are able to effectively extract knowledge and…

Data Structures and Algorithms · Computer Science 2020-09-03 Xian Wu , Moses Charikar

Interpreting hierarchical structures latent in language is a key limitation of current language models (LMs). While previous research has implicitly leveraged these hierarchies to enhance LMs, approaches for their explicit encoding are yet…

Computation and Language · Computer Science 2024-11-22 Yuan He , Zhangdie Yuan , Jiaoyan Chen , Ian Horrocks

Implementing and executing numerical algorithms to solve fractional differential equations has been less straightforward than using their integer-order counterparts, posing challenges for practitioners who wish to incorporate fractional…

Numerical Analysis · Mathematics 2024-07-25 Moein Khalighi , Giulio Benedetti , Leo Lahti

We prove that for meromorphic maps with logarithmic tracts (e.g. entire or meromorphic maps with a finite number of poles from class $\mathcal B$), the Julia set contains a compact invariant hyperbolic Cantor set of Hausdorff dimension…

Dynamical Systems · Mathematics 2011-05-26 Krzysztof Barański , Bogusława Karpińska , Anna Zdunik
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