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The simplicity of a question such as wondering if correlations characterize or not a certain system collides with the experimental difficulty of accessing such information. Here we present a low demanding experimental approach which refers…

Understanding neural networks is challenging due to their high-dimensional, interacting components. Inspired by human cognition, which processes complex sensory data by chunking it into recurring entities, we propose leveraging this…

Machine Learning · Computer Science 2025-02-05 Shuchen Wu , Stephan Alaniz , Eric Schulz , Zeynep Akata

Modern genomics experiments measure functional behaviors for many thousands of DNA sequences. We suggest that, especially when these sequences are chosen at random, it is natural to compute correlation functions between sequences and…

Biological Physics · Physics 2020-12-14 Yaojun Zhang , Aakash Basu , Taekjip Ha , William Bialek

Protein structure tokenization converts 3D structures into discrete or vectorized representations, enabling the integration of structural and sequence data. Despite many recent works on structure tokenization, the properties of the…

Machine Learning · Computer Science 2025-11-14 Zijing Liu , Bin Feng , He Cao , Yu Li

Objective: In recent years, the functional connectivity of the human brain has been studied with graph theoretical tools. One such approach is community detection which is fundamental for uncovering the localized networks. Existing methods…

Signal Processing · Electrical Eng. & Systems 2022-09-27 Abdullah Karaaslanli , Meiby Ortiz-Bouza , Tamanna T. K. Munia , Selin Aviyente

A cornerstone of human statistical learning is the ability to extract temporal regularities / patterns from random sequences. Here we present a method of computing pattern time statistics with generating functions for first-order Markov…

Neurons and Cognition · Quantitative Biology 2018-06-29 Yanlong Sun , Hongbin Wang

Hundreds of applications utilize frequency response characterization of a system. Identification of frequency response requires long experimentation time, use of transformation techniques and other difficulties associated with isolating the…

Systems and Control · Electrical Eng. & Systems 2021-03-22 Resmi Suresh , Raghunathan Rengaswamy

Emotion Recognition from EEG signals has long been researched as it can assist numerous medical and rehabilitative applications. However, their complex and noisy structure has proven to be a serious barrier for traditional modeling methods.…

Signal Processing · Electrical Eng. & Systems 2021-12-15 Kleanthis Avramidis , Athanasia Zlatintsi , Christos Garoufis , Petros Maragos

Time-frequency analysis is often used to study non stationary multicomponent signals, which can be viewed as the surperimposition of modes, associated with ridges in the TF plane. To understand such signals, it is essential to identify…

Signal Processing · Electrical Eng. & Systems 2022-04-06 Nils Laurent , Sylvain Meignen

Unsupervised structure learning in high-dimensional time series data has attracted a lot of research interests. For example, segmenting and labelling high dimensional time series can be helpful in behavior understanding and medical…

Machine Learning · Computer Science 2017-05-25 Hao Liu , Haoli Bai , Lirong He , Zenglin Xu

This article proposes a systematic methodological review and objective criticism of existing methods enabling the derivation of time-varying Granger-causality statistics in neuroscience. The increasing interest and the huge number of…

Applications · Statistics 2017-04-12 Sezen Cekic , Didier Grandjean , Olivier Renaud

Sequence labeling architectures use word embeddings for capturing similarity, but suffer when handling previously unseen or rare words. We investigate character-level extensions to such models and propose a novel architecture for combining…

Computation and Language · Computer Science 2016-11-15 Marek Rei , Gamal K. O. Crichton , Sampo Pyysalo

A new numerical characterization of symbolic sequences is proposed. The partition of sequence based on Ke and Tong algorithm is a starting point. Algorithm decomposes original sequence into set of distinct subsequences - a patterns. The set…

Quantitative Methods · Quantitative Biology 2011-09-08 B. Kozarzewski

Learning both hierarchical and temporal representation has been among the long-standing challenges of recurrent neural networks. Multiscale recurrent neural networks have been considered as a promising approach to resolve this issue, yet…

Machine Learning · Computer Science 2017-03-10 Junyoung Chung , Sungjin Ahn , Yoshua Bengio

Music prediction tasks range from predicting tags given a song or clip of audio, predicting the name of the artist, or predicting related songs given a song, clip, artist name or tag. That is, we are interested in every semantic…

Machine Learning · Computer Science 2015-03-19 Jason Weston , Samy Bengio , Philippe Hamel

Motivated by modern observational studies, we introduce a class of functional models that expands nested and crossed designs. These models account for the natural inheritance of correlation structure from sampling design in studies where…

Applications · Statistics 2013-04-26 Haochang Shou , Vadim Zipunnikov , Ciprian M. Crainiceanu , Sonja Greven

We present CP-JKU submission to MediaEval 2019; a Receptive Field-(RF)-regularized and Frequency-Aware CNN approach for tagging music with emotion/mood labels. We perform an investigation regarding the impact of the RF of the CNNs on their…

Multivariate spatial field data are increasingly common and whose modeling typically relies on building cross-covariance functions to describe cross-process relationships. An alternative viewpoint is to model the matrix of spectral…

Statistics Theory · Mathematics 2015-05-07 William Kleiber

Online detection of changes in stochastic systems, referred to as sequential change detection or quickest change detection, is an important research topic in statistics, signal processing, and information theory, and has a wide range of…

Statistics Theory · Mathematics 2021-04-12 Liyan Xie , Shaofeng Zou , Yao Xie , Venugopal V. Veeravalli

A sequential pattern with negation, or negative sequential pattern, takes the form of a sequential pattern for which the negation symbol may be used in front of some of the pattern's itemsets. Intuitively, such a pattern occurs in a…

Machine Learning · Computer Science 2023-09-22 Thomas Guyet