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Biomolecular condensates are liquid- or gel-like droplets of proteins and nucleic acids formed at least in part through liquid-liquid phase separation. Condensates enable diverse functions of cells and the pathogens that infect them,…

Soft Condensed Matter · Physics 2025-05-16 Layne B. Frechette , Naren Sundararajan , Fernando Caballero , Anthony Trubiano , Michael F. Hagan

Single enzyme chemotaxis is a phenomenon by which a non-equilibrium spatial distribution of an enzyme is created and maintained by concentration gradients of the substrate and product of the catalyzed reaction. These gradients can arise…

Soft Condensed Matter · Physics 2022-06-14 Niladri Sekhar Mandal , Ayusman Sen , R. Dean Astumian

Under special conditions bacteria excrete an attractant and aggregate. The high density regions initially collapse into cylindrical structures, which subsequently destabilize and break up into spherical aggregates. This paper presents a…

Biological Physics · Physics 2011-11-09 M. D. Betterton , Michael P. Brenner

Catalytically active colloids maintain non-equilibrium conditions in which they produce and deplete chemicals and hence effectively act as sources and sinks of molecules. While individual colloids that are symmetrically coated do not…

Soft Condensed Matter · Physics 2015-06-11 Rodrigo Soto , Ramin Golestanian

We show that magnetic dipolar interactions can stabilize superfluidity in atomic gases but the dipole alignment direction required to achieve this varies, depending on whether the flow is oscillatory or continuous. If a condensate is made…

Quantum Gases · Physics 2015-06-15 S. Kühn , T. E. Judd

The concept that catalytic enzymes can act as molecular machines transducing chemical activity into motion has conceptual and experimental support, but much of the claimed support comes from experimental conditions where the substrate…

Soft Condensed Matter · Physics 2020-02-04 Ah-Young Jee , Kuo Chen , Tsvi Tlusty , Jiang Zhao , Steve Granick

Enzymes have been shown to diffuse faster in the presence of their reactants. Recently, we revealed new insights into this process of enhanced diffusion using single-particle tracking (SPT) with total internal reflection fluorescence (TIRF)…

Biological Physics · Physics 2021-01-01 Mengqi Xu , W. Benjamin Rogers , Wylie W. Ahmed , Jennifer L. Ross

Chaotic internal degrees of freedom of a molecule can act as noise and affect the diffusion of the molecule on a substrate. A separation of time scales between the fast internal dynamics and the slow motion of the centre of mass on the…

Chaotic Dynamics · Physics 2011-07-14 Astrid S. de Wijn , Annalisa Fasolino

Every Bose-Einstein condensate is in a highly entangled state, as a consequence of the fact that the particles in a condensate are distributed over space in a coherent way. It is proved that any two regions within a condensate of finite…

Quantum Physics · Physics 2009-11-07 Christoph Simon

We predict that a photon condensate inside a dye-filled microcavity forms long-lived spatial structures that resemble vortices when incoherently excited by a focused pump orbiting around the cavity axis. The finely structured density of the…

Quantum Physics · Physics 2021-10-04 Himadri S. Dhar , Zai Zuo , João D. Rodrigues , Robert A. Nyman , Florian Mintert

The ground state of a rotating Bose-Einstein condensate trapped in a two-dimensional anharmonic--anisotropic potential is analyzed numerically at the limit of an infinite number of particles. We find that the density breaks up along the $x$…

Quantum Gases · Physics 2024-12-05 Sunayana Dutta , Axel U. J. Lode , Ofir E. Alon

A stochastic model for the dynamics of enzymatic catalysis in explicit, effective solvents under physiological conditions is presented. Analytically-computed first passage time densities of a diffusing particle in a spherical shell with…

Biomolecules · Quantitative Biology 2015-06-04 Jeremy Schofield , Paul Inder , Raymond Kapral

We investigate, theoretically and numerically, the spin dynamics of a two-component exciton-polariton condensate created and sustained by non-resonant spin-polarized optical pumping of a semiconductor microcavity. Using the open-dissipative…

Quantum Gases · Physics 2015-08-26 G. Li , T. C. H. Liew , O. A. Egorov , E. A. Ostrovskaya

Driven suspensions, where energy is input at a particle scale, are a framework for understanding general principles of out-of-equilibrium organization. A large number of simple interacting units can give rise to non-trivial structure and…

Soft Condensed Matter · Physics 2026-01-23 Pamud Akalanka Bethmage , Ryker Fish , Brennan Sprinkle , Michelle M. Driscoll

We numerically study the dynamics of run-and-tumble particles confined in two chambers connected by thin channels. Two dominant dynamical behaviors emerge: (i) an oscillatory pumping state, in which particles periodically fill the two…

Soft Condensed Matter · Physics 2015-11-04 M. Paoluzzi , R. Di Leonardo , L. Angelani

We show that stimulated scattering of an isolated system of N Bose particles with initially broad energy distribution can yield condensation of particles into excited collective state in which most of the bosons occupy one or several modes.…

Quantum Gases · Physics 2026-03-31 Anatoly A. Svidzinsky , Luqi Yuan , Marlan O. Scully

Classical descriptions of enzyme kinetics ignore the physical nature of the intracellular environment. Main implicit assumptions behind such approaches are that reactions occur in compartment volumes which are large enough so that molecular…

Subcellular Processes · Quantitative Biology 2009-10-26 Ramon Grima

We experimentally investigate how aerotactic bacteria, confined within a thin liquid film between two solid substrates, respond to a controlled oxygen gradient. We find that the total bacterial number density dictates which mechanism…

Soft Condensed Matter · Physics 2026-04-07 Minjun Kim , Joonwoo Jeong

In a binary fluid mixture, the concentration gradient of a heavier molecular solute leads to a diffusive flux of solvent and solute to achieve thermodynamic equilibrium. If the solute concentration decreases with height, the system is…

Disorder plays a crucial role in spin dynamics in solids and condensed matter systems. We demonstrate that for a spin-orbit coupled Bose-Einstein condensate in a random potential two mechanisms of spin evolution, that can be characterized…

Quantum Gases · Physics 2015-11-17 S. Mardonov , M. Modugno , E. Ya. Sherman