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The time complexity of data clustering has been viewed as fundamentally quadratic, slowing with the number of data items, as each item is compared for similarity to preceding items. Clustering of large data sets has been infeasible without…

Data Structures and Algorithms · Computer Science 2017-02-28 Jonathan A. Marshall , Lawrence C. Rafsky

We present an efficient and exact Monte Carlo algorithm to simulate reversible aggregation of particles with dedicated binding sites. This method introduces a novel data structure of dynamic bond tree to record clusters and sequences of…

Quantitative Methods · Quantitative Biology 2011-09-27 Qiang Chang , Jin Yang

Spectral clustering refers to a family of unsupervised learning algorithms that compute a spectral embedding of the original data based on the eigenvectors of a similarity graph. This non-linear transformation of the data is both the key of…

Machine Learning · Computer Science 2019-01-30 Nicolas Tremblay , Andreas Loukas

We develop a new framework for generalizing approximation algorithms from the structural graph algorithm literature so that they apply to graphs somewhat close to that class (a scenario we expect is common when working with real-world…

In this paper we study the dynamic versions of two basic graph problems: Minimum Dominating Set and its variant Minimum Connected Dominating Set. For those two problems, we present algorithms that maintain a solution under edge insertions…

Data Structures and Algorithms · Computer Science 2019-01-29 Niklas Hjuler , Giuseppe F. Italiano , Nikos Parotsidis , David Saulpic

A natural approach to analyze interaction data of form "what-connects-to-what-when" is to create a time-series (or rather a sequence) of graphs through temporal discretization (bandwidth selection) and spatial discretization (vertex…

Machine Learning · Statistics 2015-01-13 Nam H. Lee , Carey Priebe , Youngser Park , I-Jeng Wang , Michael Rosen

Clustering graphs based on a comparison of the number of links within clusters and the expected value of this quantity in a random graph has gained a lot of attention and popularity in the last decade. Recently, Aldecoa and Marin proposed a…

Data Structures and Algorithms · Computer Science 2013-10-23 Tobias Fleck , Andrea Kappes , Dorothea Wagner

In this paper, we study the graph realization problem in the Congested Clique model of distributed computing under crash faults. We consider {\em degree-sequence realization}, in which each node $v$ is associated with a degree value $d(v)$,…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-08-23 Anisur Rahaman Molla , Manish Kumar , Sumathi Sivasubramaniam

We present a fully dynamic algorithm for maintaining approximate maximum weight matching in general weighted graphs. The algorithm maintains a matching ${\cal M}$ whose weight is at least $1/8 M^{*}$ where $M^{*}$ is the weight of the…

Data Structures and Algorithms · Computer Science 2012-12-13 Abhash Anand , Surender Baswana , Manoj Gupta , Sandeep Sen

In a graph $G = (V,E)$, a vertex subset $S\subseteq V(G)$ is said to be a dominating set of $G$ if every vertex not in $S$ is adjacent to a vertex in $S$. A dominating set $S$ of $G$ is called a paired-dominating set of $G$ if the induced…

Data Structures and Algorithms · Computer Science 2016-05-03 Ching-Chi Lin , Cheng-Yu Hsieh

We consider a random graph process in which, at each time step, a new vertex is added with m out-neighbours, chosen with probabilities proportional to their degree plus a strictly positive constant. We show that the expectation of the…

Combinatorics · Mathematics 2008-04-21 Nicole Eggemann , Steven D. Noble

We study the problem of clustering nodes in a dynamic graph, where the connections between nodes and nodes' cluster memberships may change over time, e.g., due to community migration. We first propose a dynamic stochastic block model that…

Machine Learning · Computer Science 2021-06-24 Yuhang Yao , Carlee Joe-Wong

Dynamic graph clustering aims to detect and track time-varying clusters in dynamic graphs, revealing the evolutionary mechanisms of complex real-world dynamic systems. Matrix factorization-based methods are promising approaches for this…

Machine Learning · Computer Science 2025-02-11 Dongyuan Li , Satoshi Kosugi , Ying Zhang , Manabu Okumura , Feng Xia , Renhe Jiang

Time series clustering poses a significant challenge with diverse applications across domains. A prominent drawback of existing solutions lies in their limited interpretability, often confined to presenting users with centroids. In…

Machine Learning · Computer Science 2025-02-19 Paul Boniol , Donato Tiano , Angela Bonifati , Themis Palpanas

We show that a simple single-pass semi-streaming variant of the Pivot algorithm for Correlation Clustering gives a (3 + {\epsilon})-approximation using O(n/{\epsilon}) words of memory. This is a slight improvement over the recent results of…

Data Structures and Algorithms · Computer Science 2023-05-24 Sayak Chakrabarty , Konstantin Makarychev

In the Correlation Clustering, also known as Cluster Editing, we are given an undirected n-vertex graph G and a positive integer k. The task is to decide if G can be transformed into a cluster graph, i.e., a disjoint union of cliques, by…

Computational Complexity · Computer Science 2015-03-19 Fedor V. Fomin , Stefan Kratsch , Marcin Pilipczuk , Michał Pilipczuk , Yngve Villanger

Graph coloring is fundamental to distributed computing. We give the first sub-logarithmic distributed algorithm for coloring cluster graphs. These graphs are obtained from the underlying communication network by contracting nodes and edges,…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-06-17 Maxime Flin , Magnus M. Halldorsson , Alexandre Nolin

(I) We revisit the algorithmic problem of finding all triangles in a graph $G=(V,E)$ with $n$ vertices and $m$ edges. According to a result of Chiba and Nishizeki (1985), this task can be achieved by a combinatorial algorithm running in…

Data Structures and Algorithms · Computer Science 2026-02-18 Ke Chen , Adrian Dumitrescu , Andrzej Lingas

We consider the semi-random graph model of [Makarychev, Makarychev and Vijayaraghavan, STOC'12], where, given a random bipartite graph with $\alpha$ edges and an unknown bipartition $(A, B)$ of the vertex set, an adversary can add arbitrary…

Data Structures and Algorithms · Computer Science 2024-06-10 Vincent Cohen-Addad , Tommaso d'Orsi , Aida Mousavifar

We provide an algorithm that maintains, against an adaptive adversary, a $(1-\varepsilon)$-approximate maximum matching in $n$-node $m$-edge general (not necessarily bipartite) undirected graph undergoing edge deletions with high…

Data Structures and Algorithms · Computer Science 2024-12-05 Jiale Chen , Aaron Sidford , Ta-Wei Tu
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