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Liquid Chromatography Mass Spectrometry (LC-MS) is an indispensable analytical technique in proteomics, metabolomics, and other life sciences. While OpenMS provides advanced open-source software for MS data analysis, its complexity can be…

Small-angle X-ray and neutron scattering experiments are used in many fields of the life sciences and condensed matter research to obtain answers to questions about the shape and size of nano-sized structures, typically in the range of 1 to…

Data Analysis, Statistics and Probability · Physics 2015-06-10 Ingo Breßler , Joachim Kohlbrecher , Andreas F. Thünemann

Through the integration of external tools, large language models (LLMs) such as GPT-4o and Llama 3.1 significantly expand their functional capabilities, evolving from elementary conversational agents to general-purpose assistants. We argue…

Computation and Language · Computer Science 2024-10-16 Zhenchao Jin , Mengchen Liu , Dongdong Chen , Lingting Zhu , Yunsheng Li , Lequan Yu

Simulation is widely adopted in the study of modern computer networks. In this context, OMNeT++ provides a set of very effective tools that span from the definition of the network, to the automation of simulation execution and quick result…

Performance · Computer Science 2016-09-16 Antonio Virdis , Carlo Vallati , Giovanni Nardini

With the arrival of a number of wide-field snapshot image-plane radio transient surveys, there will be a huge influx of images in the coming years making it impossible to manually analyse the datasets. Automated pipelines to process the…

We present MatplotAlt, an open-source Python package for easily adding alternative text to Matplotlib figures. MatplotAlt equips Jupyter notebook authors to automatically generate and surface chart descriptions with a single line of code or…

Human-Computer Interaction · Computer Science 2025-03-27 Kai Nylund , Jennifer Mankoff , Venkatesh Potluri

Stepwise refinement of algebraic specifications is a well known formal methodology for program development. However, traditional notions of refinement based on signature morphisms are often too rigid to capture a number of relevant…

Logic in Computer Science · Computer Science 2015-07-01 Manuel A. Martins , Alexandre Madeira , Luis S. Barbosa

We present the Open MatSci ML Toolkit: a flexible, self-contained, and scalable Python-based framework to apply deep learning models and methods on scientific data with a specific focus on materials science and the OpenCatalyst Dataset. Our…

Machine Learning · Computer Science 2023-09-01 Santiago Miret , Kin Long Kelvin Lee , Carmelo Gonzales , Marcel Nassar , Matthew Spellings

Linear discriminant analysis (LDA) is a powerful tool in building classifiers with easy computation and interpretation. Recent advancements in science technology have led to the popularity of datasets with high dimensions, high orders and…

Computation · Statistics 2019-04-09 Yuqing Pan , Qing Mai , Xin Zhang

All solutions SAT (AllSAT for short) is a variant of propositional satisfiability problem. Despite its significance, AllSAT has been relatively unexplored compared to other variants. We thus survey and discuss major techniques of AllSAT…

Data Structures and Algorithms · Computer Science 2016-11-10 Takahisa Toda , Takehide Soh

Various fields of science and engineering rely on linear algebra for large scale data analysis, modeling and simulation, machine learning, and other applied problems. Linear algebra computations often dominate the execution time of such…

Mathematical Software · Computer Science 2014-08-07 Boyana Norris , Sa-Lin Bernstein , Ramya Nair , Elizabeth Jessup

The RooStats toolkit, which is distributed with the ROOT software package, provides a large collection of software tools that implement statistical methods commonly used by the High Energy Physics community. The toolkit is based on RooFit,…

Data Analysis, Statistics and Probability · Physics 2019-08-14 Grégory Schott

Context: To reduce manual effort of extracting test cases from natural-language requirements, many approaches based on Natural Language Processing (NLP) have been proposed in the literature. Given the large amount of approaches in this…

Software Engineering · Computer Science 2020-03-25 Vahid Garousi , Sara Bauer , Michael Felderer

In this paper, we present TILT, a transparency information language and toolkit explicitly designed to represent and process transparency information in line with the requirements of the GDPR and allowing for a more automated and adaptive…

Computers and Society · Computer Science 2022-09-26 Elias Grünewald , Frank Pallas

This paper introduces LAFT, a novel feature transformation method designed to incorporate user knowledge and preferences into anomaly detection using natural language. Accurately modeling the boundary of normality is crucial for…

Machine Learning · Computer Science 2025-03-04 EungGu Yun , Heonjin Ha , Yeongwoo Nam , Bryan Dongik Lee

A new statistical technique for constructing linear latent structure (LLS) models from available data, supported by well established theoretical results and an efficient algorithm, is presented. The method reduces the problem of estimating…

Statistics Theory · Mathematics 2007-06-13 I. Akushevich , M. Kovtun , A. I. Yashin , K. G. Manton

Many different tagsets are used in existing corpora; these tagsets vary according to the objectives of specific projects (which may be as far apart as robust parsing vs. spelling correction). In many situations, however, one would like to…

cmp-lg · Computer Science 2008-02-03 Simone Teufel

Sign Language Assessment (SLA) tools are useful to aid in language learning and are underdeveloped. Previous work has focused on isolated signs or comparison against a single reference video to assess Sign Languages (SL). This paper…

Computer Vision and Pattern Recognition · Computer Science 2024-08-20 Oliver Cory , Ozge Mercanoglu Sincan , Matthew Vowels , Alessia Battisti , Franz Holzknecht , Katja Tissi , Sandra Sidler-Miserez , Tobias Haug , Sarah Ebling , Richard Bowden

The method of Arterial Spin Labeling (ASL) has experienced a significant rise in its application to functional imaging, since it is the only technique capable of measuring blood perfusion in a truly non-invasive manner. Currently, there are…

Software Engineering · Computer Science 2024-01-24 Virginia Mato Abad , Pablo Garcia-Polo , Owen ODaly , Juan Antonio Hernandez-Tamames , Fernando Zelaya

The CMAP (cultural mapping and pattern analysis) visualization toolkit introduced in this paper is an open-source suite for analyzing and visualizing text data - from qualitative fieldnotes and in-depth interview transcripts to historical…

Applications · Statistics 2025-10-21 Corey M. Abramson , Yuhan , Nian