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Spiking Neural Networks (SNNs) are extensively utilized in brain-inspired computing and neuroscience research. To enhance the speed and energy efficiency of SNNs, several many-core accelerators have been developed. However, maintaining the…

Neural and Evolutionary Computing · Computer Science 2024-07-31 Zhuo Chen , De Ma , Xiaofei Jin , Qinghui Xing , Ouwen Jin , Xin Du , Shuibing He , Gang Pan

Due to the sequential sample arrival, changing experiment conditions, and evolution of knowledge, the demand to continually visualize evolving structures of sequential and diverse single-cell RNA-sequencing (scRNA-seq) data becomes…

Genomics · Quantitative Biology 2024-06-24 Hui Ma , Kai Chen

t-SNE is a popular tool for embedding multi-dimensional datasets into two or three dimensions. However, it has a large computational cost, especially when the input data has many dimensions. Many use t-SNE to embed the output of a neural…

Machine Learning · Computer Science 2019-12-04 Rikhav Shah , Sandeep Silwal

Deep learning implementations on CPUs (Central Processing Units) are gaining more traction. Enhanced AI capabilities on commodity x86 architectures are commercially appealing due to the reuse of existing hardware and virtualization ease. A…

Machine Learning · Computer Science 2021-03-22 Shabnam Daghaghi , Nicholas Meisburger , Mengnan Zhao , Yong Wu , Sameh Gobriel , Charlie Tai , Anshumali Shrivastava

Molecular simulation trajectories represent high-dimensional data. Such data can be visualized by methods of dimensionality reduction. Non-linear dimensionality reduction methods are likely to be more efficient than linear ones due to the…

Chemical Physics · Physics 2020-08-24 Vojtěch Spiwok , Pavel Kříž

We develop methods for accelerating metric similarity search that are effective on modern hardware. Our algorithms factor into easily parallelizable components, making them simple to deploy and efficient on multicore CPUs and GPUs. Despite…

Databases · Computer Science 2016-11-15 Lawrence Cayton

Most existing graph visualization methods based on dimension reduction are limited to relatively small graphs due to performance issues. In this work, we propose a novel dimension reduction method for graph visualization, called…

Machine Learning · Computer Science 2023-10-18 Xinyu Li , Yao Xiao , Yuchen Zhou

Dimensionality reduction techniques are essential for visualizing and analyzing high-dimensional biological sequencing data. t-distributed Stochastic Neighbor Embedding (t-SNE) is widely used for this purpose, traditionally employing the…

Machine Learning · Computer Science 2025-12-19 Avais Jan , Prakash Chourasia , Sarwan Ali , Murray Patterson

The computational inefficiency of spiking neural networks (SNNs) is primarily due to the sequential updates of membrane potential, which becomes more pronounced during extended encoding periods compared to artificial neural networks (ANNs).…

Computer Vision and Pattern Recognition · Computer Science 2024-12-31 Hanqi Chen , Lixing Yu , Shaojie Zhan , Penghui Yao , Jiankun Shao

This paper presents a kernelized version of the t-SNE algorithm, capable of mapping high-dimensional data to a low-dimensional space while preserving the pairwise distances between the data points in a non-Euclidean metric. This can be…

Machine Learning · Computer Science 2023-11-22 Denis C. Ilie-Ablachim , Bogdan Dumitrescu , Cristian Rusu

T-distributed stochastic neighbor embedding (t-SNE) is a well-known algorithm for visualizing high-dimensional data by finding low-dimensional representations. In this paper, we study the convergence of t-SNE with generalized kernels and…

Machine Learning · Statistics 2025-06-10 Yi Gu

Binary Neural Networks (BNNs) are promising to deliver accuracy comparable to conventional deep neural networks at a fraction of the cost in terms of memory and energy. In this paper, we introduce the XNOR Neural Engine (XNE), a fully…

Neural and Evolutionary Computing · Computer Science 2018-07-23 Francesco Conti , Pasquale Davide Schiavone , Luca Benini

Real-world node embedding applications often contain hundreds of billions of edges with high-dimension node features. Scaling node embedding systems to efficiently support these applications remains a challenging problem. In this paper we…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-08-19 Wanjing Wei , Yangzihao Wang , Pin Gao , Shijie Sun , Donghai Yu

This research explores the use of superconductor electronics (SCE) for accelerating fully homomorphic encryption (FHE), focusing on the Number-Theoretic Transform (NTT), a key computational bottleneck in FHE schemes. We present SCE-NTT, a…

Learning continuous representations of nodes is attracting growing interest in both academia and industry recently, due to their simplicity and effectiveness in a variety of applications. Most of existing node embedding algorithms and…

Machine Learning · Computer Science 2019-03-05 Zhaocheng Zhu , Shizhen Xu , Meng Qu , Jian Tang

Brain-inspired Spiking Neural Networks (SNNs) have attracted attention for their event-driven characteristics and high energy efficiency. However, the temporal dependency and irregularity of spikes present significant challenges for…

Hardware Architecture · Computer Science 2025-06-11 Kainan Wang , Chengyi Yang , Chengting Yu , Yee Sin Ang , Bo Wang , Aili Wang

Training a deep neural network (DNN) requires substantial computational and memory requirements. It is common to use multiple devices to train a DNN to reduce the overall training time. There are several choices to parallelize each layer in…

Machine Learning · Computer Science 2024-07-08 Venmugil Elango

Progressive Visual Analytics aims at improving the interactivity in existing analytics techniques by means of visualization as well as interaction with intermediate results. One key method for data analysis is dimensionality reduction, for…

Computer Vision and Pattern Recognition · Computer Science 2016-06-17 Nicola Pezzotti , Boudewijn P. F. Lelieveldt , Laurens van der Maaten , Thomas Höllt , Elmar Eisemann , Anna Vilanova

In this paper we analyze, evaluate, and improve the performance of training generalized linear models on modern CPUs. We start with a state-of-the-art asynchronous parallel training algorithm, identify system-level performance bottlenecks,…

Machine Learning · Computer Science 2018-12-20 Nikolas Ioannou , Celestine Dünner , Kornilios Kourtis , Thomas Parnell

A fundamental task in machine learning involves visualizing high-dimensional data sets that arise in high-impact application domains. When considering the context of large imbalanced data, this problem becomes much more challenging. In this…

Machine Learning · Computer Science 2021-09-21 Parisa Hajibabaee , Farhad Pourkamali-Anaraki , Mohammad Amin Hariri-Ardebili