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Organoids replicate organ structure and function, playing a crucial role in fields such as tumor treatment and drug screening. Their shape and size can indicate their developmental status, but traditional fluorescence labeling methods risk…

Computer Vision and Pattern Recognition · Computer Science 2025-09-04 Jing Zhang , Siying Tao , Jiao Li , Tianhe Wang , Junchen Wu , Ruqian Hao , Xiaohui Du , Ruirong Tan , Rui Li

This paper addresses the problem of tracking in-plane waves from image sequences using periodic surface patterns. Wave-induced deformation is modeled as a spatial phase modulation of a periodic carrier. We propose ADOPT (Analytical…

Signal Processing · Electrical Eng. & Systems 2026-05-20 Jalal Jouidi , Florent Chatelain , Lucie Bailly , Pierre Granjon , Nicolas Le Bihan , Stefan Catheline

Dynamic representation learning plays a pivotal role in understanding the evolution of linguistic content over time. On this front both context and time dynamics as well as their interplay are of prime importance. Current approaches model…

Computation and Language · Computer Science 2024-10-23 Talia Tseriotou , Adam Tsakalidis , Maria Liakata

Breast cancer is a health problem that affects mainly the female population. An early detection increases the chances of effective treatment, improving the prognosis of the disease. In this regard, computational tools have been proposed to…

Computer Vision and Pattern Recognition · Computer Science 2022-03-01 Steve Tsham Mpinda Ataky , Alessandro Lameiras Koerich

The Detection Transformer (DETR) has revolutionized the design of CNN-based object detection systems, showcasing impressive performance. However, its potential in the domain of multi-frame 3D object detection remains largely unexplored. In…

Computer Vision and Pattern Recognition · Computer Science 2025-08-21 Yifan Zhang , Zhiyu Zhu , Junhui Hou , Dapeng Wu

The distribution and interactions of cellular organelles play a critical role in mediating cellular physiology and pathology. Large-scale electron microscopy enables visualization of organelle distribution and interactions at the tissue…

Biological Physics · Physics 2026-02-24 Li Xiao , Liqing Liu , Hongjun Wu , Jiayi Zhong , Xixia Li , Yan Zhang , Junjie Hu , Sun Fei , Ge Yang , Tao Xu

At present, people usually use some methods based on convolutional neural networks (CNNs) for Electroencephalograph (EEG) decoding. However, CNNs have limitations in perceiving global dependencies, which is not adequate for common EEG…

Signal Processing · Electrical Eng. & Systems 2021-06-23 Yonghao Song , Xueyu Jia , Lie Yang , Longhan Xie

Change detection (CD) by comparing two bi-temporal images is a crucial task in remote sensing. With the advantages of requiring no cumbersome labeled change information, unsupervised CD has attracted extensive attention in the community.…

Computer Vision and Pattern Recognition · Computer Science 2023-08-03 Qingsong Xu , Yilei Shi , Jianhua Guo , Chaojun Ouyang , Xiao Xiang Zhu

Purpose: Electron density is the most important tissue property influencing photon and ion dose distributions in radiotherapy patients. Dual-energy computed tomography (DECT) enables the determination of electron density by combining the…

Medical Physics · Physics 2017-06-29 Christian Möhler , Patrick Wohlfahrt , Christian Richter , Steffen Greilich

Temporal causal representation learning is a powerful tool for uncovering complex patterns in observational studies, which are often represented as low-dimensional time series. However, in many real-world applications, data are…

Machine Learning · Computer Science 2025-07-21 Jianhong Chen , Meng Zhao , Mostafa Reisi Gahrooei , Xubo Yue

Automatic segmentation of organs-at-risk (OAR) in computed tomography (CT) is an essential part of planning effective treatment strategies to combat lung and esophageal cancer. Accurate segmentation of organs surrounding tumours helps…

Computer Vision and Pattern Recognition · Computer Science 2019-05-21 Sulaiman Vesal , Nishant Ravikumar , Andreas Maier

Phase sensitive detection in spectral domain optical coherence tomography (SD-OCT) is a powerful method for functional imaging of biological events with high spatiotemporal resolution. The depth-dependent signal-to-noise ratio (SNR) is a…

Biological cells are able to generate intricate structures and respond to external stimuli, sculpting their membrane from within. Simplified biomimetic systems can aid in understanding the principles which govern these shape changes and…

We propose a new scanning transmission electron microscopy (STEM) technique that can realize the three-dimensional (3D) characterization of vacancies, lighter and heavier dopants with high precision. Using multislice STEM imaging and…

Materials Science · Physics 2016-07-12 Jared M. Johnson , Soohyun Im , Jinwoo Hwang

Bioprinting technology has advanced significantly in the fabrication of tissue-like constructs with complex geometries for regenerative medicine. However, maintaining the structural integrity of bioprinted materials remains a major…

Quantitative Methods · Quantitative Biology 2026-01-05 Md Anisur Rahman , Md Asif Hasan Khan , Tuan Mai , Jinki Kim

Segmenting multiple objects (e.g., organs) in medical images often requires an understanding of their topology, which simultaneously quantifies the shape of the objects and their positions relative to each other. This understanding is…

Image and Video Processing · Electrical Eng. & Systems 2024-08-16 Mehmet Bahadir Erden , Sinan Unver , Ilke Ali Gurses , Rustu Turkay , Cigdem Gunduz-Demir

Morphogenesis of living systems involves topological shape transformations which are highly unusual in the inanimate world. Here we demonstrate that a droplet of a nematic liquid crystal changes its equilibrium shape from a simply-connected…

Soft Condensed Matter · Physics 2023-07-04 Runa Koizumi , Dmitry Golovaty , Ali Alqarni , Bing-Xiang Li , Peter J. Sternberg , Oleg D. Lavrentovich

Hyperuniform many-body systems in $d$-dimensional Euclidean space are characterized by completely suppressed (normalized) infinite-wavelength density fluctuations, and appear to be endowed with novel exotic physical properties. In this…

Soft Condensed Matter · Physics 2021-06-09 Duyu Chen , Yu Zheng , Chia-Hao Lee , Sangmin Kang , Wenjuan Zhu , Houlong Zhuang , Pinshane Y. Huang , Yang Jiao

For sequences of complex 3D shapes in time we present a general approach to detect patterns for their analysis and to predict the deformation by making use of structural components of the complex shape. We incorporate long short-term memory…

Computer Vision and Pattern Recognition · Computer Science 2020-09-09 Sara Hahner , Rodrigo Iza-Teran , Jochen Garcke

Encoder-decoder networks become a popular choice for various medical image segmentation tasks. When they are trained with a standard loss function, these networks are not explicitly enforced to preserve the shape integrity of an object in…

Computer Vision and Pattern Recognition · Computer Science 2023-09-22 Mehmet Bahadir Erden , Selahattin Cansiz , Onur Caki , Haya Khattak , Durmus Etiz , Melek Cosar Yakar , Kerem Duruer , Berke Barut , Cigdem Gunduz-Demir