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Ion channels are of major interest and form an area of intensive research in the fields of biophysics and medicine since they control many vital physiological functions. The aim of this work is on one hand to propose a fully stochastic and…

Biomolecules · Quantitative Biology 2016-01-11 Daniela Morale , Mattia Zanella , Vincenzo Capasso , Willi Jaeger

We have used molecular simulation and methods of importance sampling to study the thermodynamics and kinetics of ionic charge separation at a liquid water-metal interface. We have considered this process using canonical examples of two…

Chemical Physics · Physics 2022-06-08 John A. Kattirtzi , David T. Limmer , Adam P. Willard

Potassium channels play critical roles in many physiological processes, providing a selective permeation route for K+ ions in and out of a cell, by employing a carefully designed selectivity filter, evolutionarily conserved from viruses to…

Biological Physics · Physics 2021-04-16 Andrei Mironenko , Ulrich Zachariae , Bert L. de Groot , Wojciech Kopec

Recent developments in fabrication techniques enabled the production of nano- and angstrom-scale conduits. While scientists are able to conduct experimental studies to demonstrate extreme evaporation rates from these capillaries,…

Soft Condensed Matter · Physics 2019-03-18 Yigit Akkus , Anil Koklu , Ali Beskok

Fine-tuned ion transport across nanoscale pores is key to many biological processes such as neurotransmission. Recent advances have enabled the confinement of water and ions to two dimensions, unveiling transport properties unreachable at…

Soft Condensed Matter · Physics 2023-01-18 P. Robin , T. Emmerich , A. Ismail , A. Niguès , Y. You , G. -H. Nam , A. Keerthi , A. Siria , A. K. Geim , B. Radha , L. Bocquet

We study the diffusive behaviour of interacting active particles (self-propelled) with mass $m$ in an asymmetric channel. The particles are subjected to an external oscillatory force along the length of the channel. In this setup, particles…

Soft Condensed Matter · Physics 2023-08-28 Ankit Gupta , P. S. Burada

Sorting elongated anisotropic particles, such as fibers, dispersed in suspensions poses significant challenges as they present two characteristic dimensions: length and diameter. Fibers in suspension usually align with the flow, leading to…

Soft Condensed Matter · Physics 2024-09-16 Justin Maddox , Alban Sauret

The energetics of ionic selectivity in the neuronal sodium channels is studied. A simple model constructed for the selectivity filter of the channel is used. The selectivity filter of this channel type contains aspartate (D), glutamate (E),…

Soft Condensed Matter · Physics 2015-04-06 D. Boda , G. Leaf , J. Fonseca , B. Eisenberg

A discrete electrostatic/diffusion model has been developed to describe the selective permeation of ion channels, based on ionic Coulomb blockade (ICB) and quantised dehydration (QD). It has been applied to describe selectivity phenomena…

The diffusivity of water in aqueous cesium iodide solutions is larger than that in neat liquid water, and vice versa for sodium chloride solutions. Such peculiar ion-specific behavior, called anomalous diffusion, is not reproduced in…

Chemical Physics · Physics 2023-10-26 Nikhil V. S. Avula , Michael L. Klein , Sundaram Balasubramanian

The uptake and sorption of charged molecules by responsive polymer membranes and hydrogels in aqueous solutions is of key importance for the development of soft functional materials. Here we investigate the partitioning of simple monoatomic…

Soft Condensed Matter · Physics 2020-03-24 Matej Kanduč , Won Kyu Kim , Rafael Roa , Joachim Dzubiella

Sorting and separation of microparticles is a challenging problem of interdisciplinary nature. Existing technologies can differentiate microparticles by their bulk properties, such as size, density, electric polarizability, etc. The next…

Soft Condensed Matter · Physics 2018-09-03 Chenhui Peng , Taras Turiv , Yubing Guo , Qi-Huo Wei , Oleg D. Lavrentovich

In order to detect the effect of the surface charge discreteness on the properties at the solid-liquid interface, molecular dynamics simulation model taking consideration of the vibration of wall atoms was used to investigate the ion and…

Chemical Physics · Physics 2016-12-20 Yinghua Qiu , Yunfei Chen

Recent experimental advances in nanofluidics have allowed to explore ion transport across molecular-scale pores, in particular for iontronic applications. Two dimensional nanochannels -- in which a single molecular layer of electrolyte is…

Soft Condensed Matter · Physics 2025-01-22 Damien Toquer , Lydéric Bocquet , Paul Robin

One of the key materials in solid-state lithium batteries is fast ion conductors. However, the Li+ ion transport in inorganic crystals involves complex factors, making it a mystery to find and design ion conductors with low migration…

Materials Science · Physics 2024-06-06 Qifan Yang , Jing Xu , Yuqi Wang , Xiao Fu , Ruijuan Xiao , Hong Li

A simple theory of ion permeation through a channel is presented, in which diffusion occurs according to Fick's law and drift according to Ohm's law, in the electric field determined by all the charges present. This theory accounts for…

Biomolecules · Quantitative Biology 2016-10-17 Bob Eisenberg

Ion transport measurements are widely used as an indirect probe for various properties of confined electrolytes. It is generally assumed that the ion concentration in a nanoscale channel is equal to the ion concentration in the macroscopic…

Soft Condensed Matter · Physics 2023-04-05 Paul Robin , Adrien Delahais , Lydéric Bocquet , Nikita Kavokine

The phase offset between surface charge modulation and geometric undulations in a corrugated nanochannel provides a tunable mechanism for rectified, diode-like ion transport under purely pressure-driven conditions: reversing the applied…

Fluid Dynamics · Physics 2026-05-15 Thomas Petersen , Pouya Golchin , Jinwoo Im , Felipe P. J. de Barros

Ionic transport in nanopores or nanochannels is key to many cellular processes and is now being explored as a method for DNA/polymer sequencing and detection. Although apparently simple in its scope, the study of ionic dynamics in confined…

Mesoscale and Nanoscale Physics · Physics 2013-06-13 Andrew Meyertholen , Massimiliano Di Ventra

For ion channel gating, the appearance of two distinct conformational states and the discrete transitions between them is essential, and therefore of crucial importance to all living organisms. We show that the physical interplay between…

Soft Condensed Matter · Physics 2015-06-19 Douwe Jan Bonthuis , Ramin Golestanian