Related papers: Version 2.0.0 -- M-SPARC: Matlab-Simulation Packag…
The kappa_SQ software package is designed to assist researchers working on randomized row sampling. The package contains a collection of Matlab functions along with a GUI that ties them all together and provides a platform for the user to…
This article is intended for physics educators and students at school and undergraduate level. It is used at our department to introduce students to simulation and offer a guide in using statistics in physics. The simulation code was…
Matter-RADiation interaction SIMulation (MRADSIM) is an innovative modular software toolkit developed to simulate the effects of radiation on electronic components, human beings and various materials. It incorporates innovative features…
We present OpenRBC, a coarse-grained molecular dynamics code, which is capable of performing an unprecedented in silico experiment --- simulating an entire mammal red blood cell lipid bilayer and cytoskeleton as modeled by 4 million…
Simulating water from first principles remains a significant computational challenge due to the slow dynamics of the underlying system. Although machine-learned interatomic potentials (MLPs) can accelerate these simulations, they often fail…
AlfaMC is a Monte Carlo simulation code for the transport of alpha particles. The code is based on the Continuous Slowing Down Approximation and uses the NIST/ASTAR stopping-power database. The code uses a powerful geometrical package…
Sparse coding aims to model data vectors as sparse linear combinations of basis elements, but a majority of related studies are restricted to continuous data without spatial or temporal structure. A new model-based sparse coding (MSC)…
This paper introduces the FermiFab toolbox for many-particle quantum systems. It is mainly concerned with the representation of (symbolic) fermionic wavefunctions and the calculation of corresponding reduced density matrices (RDMs). The…
We present a first-principles computer code package (ABACUS) that is based on density functional theory and numerical atomic basis sets. Theoretical foundations and numerical techniques used in the code are described, with focus on the…
We present the Mock Map Facility, a powerful tool to generate mock catalogues or images from semi-analytically post-processed snapshots of cosmological N-body simulations. The paper describes in detail an efficient technique to create such…
We present an open-source, performant, pure-python molecular dynamics (MD) suite for non-ideal plasmas. The code, Sarkas, aims to accelerate the research process by providing an MD code but also pre- and post-processing tools. Sarkas offers…
We present a new galaxy survey simulation package, which combines the power of Markov Chain Monte Carlo (MCMC) sampling with a robust and adaptable model of galaxy evolution. The aim of this code is to aid in the characterization and study…
The Imaging Computational Microscope (ICM) is a suite of computational tools for automated analysis of functional imaging data that runs under the cross-platform MATLAB environment (The Mathworks, Inc.). ICM uses a semi-supervised…
The program {\tt TOPAZ0} is designed for computing $Z^0$ parameters, de-convoluted and QED-dressed cross sections and forward-backward asymmetries of $e^+ e^-$ annihilation into fermion pairs and of Bhabha scattering around the $Z^0$ peak,…
We review recent advances in the capabilities of the open source ab initio Quantum Monte Carlo (QMC) package QMCPACK and the workflow tool Nexus used for greater efficiency and reproducibility. The auxiliary field QMC (AFQMC) implementation…
mVMC (many-variable Variational Monte Carlo) is an open-source software based on the variational Monte Carlo method applicable for a wide range of Hamiltonians for interacting fermion systems. In mVMC, we introduce more than ten thousands…
We study sparse regression codes (SPARC) for multiple access channels with multiple receive antennas, in non-coherent flat fading channels. We propose a novel practical decoder, referred to as maximum likelihood matching pursuit (MLMP),…
MCPlas is introduced as a powerful tool for automated fluid model generation with application to the analysis of dielectric barrier discharges operating in different regimes. MCPlas consists of a number of…
In this paper, we study a concatenate coding scheme based on sparse regression code (SPARC) and tree code for unsourced random access in massive multiple-input and multiple-output systems. Our focus is concentrated on efficient decoding for…
We compute realistic 3D radiative MHD near-surface models of starspots with substantial penumbrae on cool main-sequence stars using the MURaM simulation code. This work is an improvement on the the previous starspot models in a slab…