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Deformable registration consists of finding the best dense correspondence between two different images. Many algorithms have been published, but the clinical application was made difficult by the high calculation time needed to solve the…

Computer Vision and Pattern Recognition · Computer Science 2021-11-25 Théo Estienne , Maria Vakalopoulou , Enzo Battistella , Theophraste Henry , Marvin Lerousseau , Amaury Leroy , Nikos Paragios , Eric Deutsch

Robotic-assisted surgery allows surgeons to conduct precise surgical operations with stereo vision and flexible motor control. However, the lack of 3D spatial perception limits situational awareness during procedures and hinders mastering…

Image and Video Processing · Electrical Eng. & Systems 2022-03-07 Shang Zhao , Ce Wang , Qiyuan Wang , Yanzhe Liu , S Kevin Zhou

We present 3DeepCT, a deep neural network for computed tomography, which performs 3D reconstruction of scattering volumes from multi-view images. Our architecture is dictated by the stationary nature of atmospheric cloud fields. The task of…

Image and Video Processing · Electrical Eng. & Systems 2020-12-14 Yael Sde-Chen , Yoav Y. Schechner , Vadim Holodovsky , Eshkol Eytan

Medical image registration is a critical task that estimates the spatial correspondence between pairs of images. However, current traditional and deep-learning-based methods rely on similarity measures to generate a deforming field, which…

Image and Video Processing · Electrical Eng. & Systems 2024-05-13 Qihua Dong , Hao Du , Ying Song , Yan Xu , Jing Liao

With an aim to increase the capture range and accelerate the performance of state-of-the-art inter-subject and subject-to-template 3D registration, we propose deep learning-based methods that are trained to find the 3D position of…

Computer Vision and Pattern Recognition · Computer Science 2018-08-21 Seyed Sadegh Mohseni Salehi , Shadab Khan , Deniz Erdogmus , Ali Gholipour

Recent advances in deep learning, like 3D fully convolutional networks (FCNs), have improved the state-of-the-art in dense semantic segmentation of medical images. However, most network architectures require severely downsampling or…

Computer Vision and Pattern Recognition · Computer Science 2018-06-07 Holger R. Roth , Chen Shen , Hirohisa Oda , Takaaki Sugino , Masahiro Oda , Yuichiro Hayashi , Kazunari Misawa , Kensaku Mori

Obtaining labelled data in medical image segmentation is challenging due to the need for pixel-level annotations by experts. Recent works have shown that augmenting the object of interest with deformable transformations can help mitigate…

Computer Vision and Pattern Recognition · Computer Science 2023-07-26 Nilesh Kumar , Prashnna K. Gyawali , Sandesh Ghimire , Linwei Wang

Accurate and robust segmentation of abdominal organs on CT is essential for many clinical applications such as computer-aided diagnosis and computer-aided surgery. But this task is challenging due to the weak boundaries of organs, the…

Computer Vision and Pattern Recognition · Computer Science 2019-04-19 Yan Wang , Yuyin Zhou , Wei Shen , Seyoun Park , Elliot K. Fishman , Alan L. Yuille

In lung radiotherapy, the primary objective is to optimize treatment outcomes by minimizing exposure to healthy tissues while delivering the prescribed dose to the target volume. The challenge lies in accounting for lung tissue motion due…

Medical Physics · Physics 2024-11-26 Frederic Madesta , Lukas Wimmert , Tobias Gauer , René Werner , Thilo Sentker

Recent works in medical image segmentation have actively explored various deep learning architectures or objective functions to encode high-level features from volumetric data owing to limited image annotations. However, most existing…

Computer Vision and Pattern Recognition · Computer Science 2021-05-18 Chae Eun Lee , Minyoung Chung , Yeong-Gil Shin

Precise image segmentation provides clinical study with instructive information. Despite the remarkable progress achieved in medical image segmentation, there is still an absence of a 3D foundation segmentation model that can segment a wide…

Computer Vision and Pattern Recognition · Computer Science 2025-02-13 Yuxin Du , Fan Bai , Tiejun Huang , Bo Zhao

Due to the inter- and intra- variation of respiratory motion, it is highly desired to provide real-time volumetric images during the treatment delivery of lung stereotactic body radiation therapy (SBRT) for accurate and active motion…

This work introduces AD-SVFD, a deep learning model for the deformable registration of vascular shapes to a pre-defined reference and for the generation of synthetic anatomies. AD-SVFD operates by representing each geometry as a weighted…

Computer Vision and Pattern Recognition · Computer Science 2025-06-03 Riccardo Tenderini , Luca Pegolotti , Fanwei Kong , Stefano Pagani , Francesco Regazzoni , Alison L. Marsden , Simone Deparis

Intraoperative ultrasound images are inherently challenging to interpret in liver surgery due to the limited field of view and complex anatomical structures. Bridging the gap between preoperative and intraoperative data is crucial for…

Computer Vision and Pattern Recognition · Computer Science 2025-08-29 Karl-Philippe Beaudet , Sidaty El Hadramy , Philippe C Cattin , Juan Verde , Stéphane Cotin

Stem cell-derived organoids are a promising tool to model native human tissues as they resemble human organs functionally and structurally compared to traditional monolayer cell-based assays. For instance, colon organoids can spontaneously…

Quantitative Methods · Quantitative Biology 2022-10-14 Lyan Abdul , Jocelyn Xu , Alexander Sotra , Abbas Chaudary , Jerry Gao , Shravanthi Rajasekar , Nicky Anvari , Hamidreza Mahyar , Boyang Zhang

Organ motion poses an unresolved challenge in image-guided interventions. In the pursuit of solving this problem, the research field of time-resolved volumetric magnetic resonance imaging (4D MRI) has evolved. However, current techniques…

Image and Video Processing · Electrical Eng. & Systems 2023-01-20 Gino Gulamhussene , Anneke Meyer , Marko Rak , Oleksii Bashkanov , Jazan Omari , Maciej Pech , Christian Hansen

We present a novel multilevel approach for deep learning based image registration. Recently published deep learning based registration methods have shown promising results for a wide range of tasks. However, these algorithms are still…

Computer Vision and Pattern Recognition · Computer Science 2020-10-28 Alessa Hering , Bram van Ginneken , Stefan Heldmann

Explainability of deep neural networks is one of the most challenging and interesting problems in the field. In this study, we investigate the topic focusing on the interpretability of deep learning-based registration methods. In…

While deep learning has achieved significant advances in accuracy for medical image segmentation, its benefits for deformable image registration have so far remained limited to reduced computation times. Previous work has either focused on…

Computer Vision and Pattern Recognition · Computer Science 2018-12-06 Alessa Hering , Sven Kuckertz , Stefan Heldmann , Mattias Heinrich

Unsafe surgical care is a critical health concern, often linked to limitations in surgeon experience, skills, and situational awareness. Integrating patient-specific 3D models into the surgical field can enhance visualization, provide…

Computer Vision and Pattern Recognition · Computer Science 2026-04-16 Alberto Neri , Veronica Penza , Nazim Haouchine , Leonardo S. Mattos