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Single-cell RNA sequencing (scRNA-seq) data exhibit strong and reproducible statistical structure. This has motivated the development of large-scale foundation models, such as TranscriptFormer, that use transformer-based architectures to…

Genomics · Quantitative Biology 2026-02-19 Huan Souza , Pankaj Mehta

X-ray phase contrast imaging holds great promise for improving the visibility of light-element materials such as soft tissues and tumors. Single-mask differential phase contrastnimaging method stands out as a simple and effective approach…

Image and Video Processing · Electrical Eng. & Systems 2024-02-02 Jingcheng Yuan , Mini Das

Domain adaptation aims to alleviate the domain shift when transferring the knowledge learned from the source domain to the target domain. Due to privacy issues, source-free domain adaptation (SFDA), where source data is unavailable during…

Computer Vision and Pattern Recognition · Computer Science 2023-10-16 Jiamei Liu , Han Sun , Yizhen Jia , Jie Qin , Huiyu Zhou , Ningzhong Liu

Single-cell-resolution spatial transcriptomics profiles gene expression at cellular locations in native tissues, yet accurate cell-type annotation remains challenging: imaging-based platforms are constrained by targeted gene panels, whereas…

Cell Behavior · Quantitative Biology 2026-05-27 Yiyang Zhang , Bokai Zhao , Xiaoru Zhang , Zongchang Du , Xiaojuan Sun , Tianzi Jiang

Integrating multimodal knowledge for abstractive summarization task is a work-in-progress research area, with present techniques inheriting fusion-then-generation paradigm. Due to semantic gaps between computer vision and natural language…

Artificial Intelligence · Computer Science 2022-08-09 Zijian Zhang , Chang Shu , Youxin Chen , Jing Xiao , Qian Zhang , Lu Zheng

Image retrieval targets to find images from a database that are visually similar to the query image. Two-stage methods following retrieve-and-rerank paradigm have achieved excellent performance, but their separate local and global modules…

Computer Vision and Pattern Recognition · Computer Science 2023-08-09 Yunquan Zhu , Xinkai Gao , Bo Ke , Ruizhi Qiao , Xing Sun

With ongoing developments and innovations in single-cell RNA sequencing methods, advancements in sequencing performance could empower significant discoveries as well as new emerging possibilities to address biological and medical…

Applications · Statistics 2019-12-19 Jiawei Long , Yu Xia

Despite the advances in the field of Face Recognition (FR), the precision of these methods is not yet sufficient. To improve the FR performance, this paper proposes a technique to aggregate the outputs of two state-of-the-art (SOTA) deep FR…

Computer Vision and Pattern Recognition · Computer Science 2023-09-26 Mohammad Akyash , Ali Zafari , Nasser M. Nasrabadi

Objective: Quantitative technique based on In-line phase-contrast computed tomography with single scanning attracts more attention in application due to the flexibility of the implementation. However, the quantitative results usually suffer…

Medical Physics · Physics 2022-06-13 Suyu Liao , Shiwo Deng , Yining Zhu , Huitao Zhang , Peiping Zhu , Kai Zhang , Xing Zhao

Motivated by the work of Uehara et al. [1], an improved method to recover DC coefficients from AC coefficients of DCT-transformed images is investigated in this work, which finds applications in cryptanalysis of selective multimedia…

Multimedia · Computer Science 2015-03-13 Shujun Li , Junaid Jameel Ahmad , Dietmar Saupe , C. -C. Jay Kuo

Joint Super-Resolution and Inverse Tone-Mapping (joint SR-ITM) aims to increase the resolution and dynamic range of low-resolution and standard dynamic range images. Recent networks mainly resort to image decomposition techniques with…

Computer Vision and Pattern Recognition · Computer Science 2023-09-08 Gang Xu , Yu-chen Yang , Liang Wang , Xian-Tong Zhen , Jun Xu

Single-cell RNA sequencing (scRNA-seq) determines RNA expression at single-cell resolution. It provides a powerful tool for studying immunity, regulation, and other life activities of cells. However, due to the limitations of the sequencing…

Genomics · Quantitative Biology 2024-02-16 Linfeng Jiang , Yuan Zhu

Non-independent and identically distributed (non-IID) data is a key challenge in federated learning (FL), which usually hampers the optimization convergence and the performance of FL. Existing data augmentation methods based on federated…

Machine Learning · Computer Science 2023-01-13 Shaoming Duan , Chuanyi Liu , Peiyi Han , Tianyu He , Yifeng Xu , Qiyuan Deng

Aggregation of multi-stage features has been revealed to play a significant role in semantic segmentation. Unlike previous methods employing point-wise summation or concatenation for feature aggregation, this study proposes the Category…

Computer Vision and Pattern Recognition · Computer Science 2023-08-11 Quan Tang , Chuanjian Liu , Fagui Liu , Yifan Liu , Jun Jiang , Bowen Zhang , Kai Han , Yunhe Wang

Labeling Cadmium Zinc Telluride (CdZnTe) semiconductor images is challenging due to the low-contrast defect boundaries, necessitating annotators to cross-reference multiple views. These views share a single ground truth (GT), forming a…

Computer Vision and Pattern Recognition · Computer Science 2025-08-19 Peihao Li , Yan Fang , Man Liu , Huihui Bai , Anhong Wang , Yunchao Wei , Yao Zhao

Multimodal single-cell technologies enable the simultaneous collection of diverse data types from individual cells, enhancing our understanding of cellular states. However, the integration of these datatypes and modeling the…

Machine Learning · Computer Science 2023-11-22 Bhavya Mehta , Nirmit Deliwala , Madhav Chandane

The Transformer model has been pivotal in advancing fields such as natural language processing, speech recognition, and computer vision. However, a critical limitation of this model is its quadratic computational and memory complexity…

Computer Vision and Pattern Recognition · Computer Science 2024-06-04 Firas Khader , Omar S. M. El Nahhas , Tianyu Han , Gustav Müller-Franzes , Sven Nebelung , Jakob Nikolas Kather , Daniel Truhn

Keyword extraction has received an increasing attention as an important research topic which can lead to have advancements in diverse applications such as document context categorization, text indexing and document classification. In this…

Information Retrieval · Computer Science 2021-01-27 Amir Jalilifard , Vinicius F. Caridá , Alex F. Mansano , Rogers S. Cristo , Felipe Penhorate C. da Fonseca

Faraday tomography (or rotation measure synthesis) is a procedure to convert linear polarization spectra into the Faraday dispersion function, which provides us with unique information of magneto-ionic media along the line of sight.…

Instrumentation and Methods for Astrophysics · Physics 2018-12-03 Kazunori Akiyama , Takuya Akahori , Yoshimitsu Miyashita , Shinsuke Ideguchi , Ryosuke Yamaguchi , Shiro Ikeda , Keitaro Takahashi

Single-cell RNA sequencing (scRNA-seq) is a relatively new technology that has stimulated enormous interest in statistics, data science, and computational biology due to the high dimensionality, complexity, and large scale associated with…

Machine Learning · Statistics 2023-10-25 Yuta Hozumi , Guo-Wei Wei
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