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We introduce DeepProbLog, a neural probabilistic logic programming language that incorporates deep learning by means of neural predicates. We show how existing inference and learning techniques of the underlying probabilistic logic…

Artificial Intelligence · Computer Science 2019-09-26 Robin Manhaeve , Sebastijan Dumančić , Angelika Kimmig , Thomas Demeester , Luc De Raedt

This paper presents Tyche, a Python library to facilitate probabilistic reasoning in uncertain worlds through the construction, querying, and learning of belief models. Tyche uses aleatoric description logic (ADL), which provides…

Artificial Intelligence · Computer Science 2022-08-23 Padraig X. Lamont

We present an open source Python 3 library aimed at practitioners of molecular simulation, especially Monte Carlo simulation. The aims of the library are to facilitate the generation of simulation data for a wide range of problems; and to…

We present pomegranate, an open source machine learning package for probabilistic modeling in Python. Probabilistic modeling encompasses a wide range of methods that explicitly describe uncertainty using probability distributions. Three…

Artificial Intelligence · Computer Science 2018-03-01 Jacob Schreiber

mlpy is a Python Open Source Machine Learning library built on top of NumPy/SciPy and the GNU Scientific Libraries. mlpy provides a wide range of state-of-the-art machine learning methods for supervised and unsupervised problems and it is…

Mathematical Software · Computer Science 2012-03-02 Davide Albanese , Roberto Visintainer , Stefano Merler , Samantha Riccadonna , Giuseppe Jurman , Cesare Furlanello

Summary Brain Predictability toolbox (BPt) represents a unified framework of machine learning (ML) tools designed to work with both tabulated data (in particular brain, psychiatric, behavioral, and physiological variables) and neuroimaging…

Machine Learning · Computer Science 2020-11-04 Sage Hahn , Dekang Yuan , Wesley Thompson , Max M Owens , Nicholas Allgaier , Hugh Garavan

The pyLOT library offers a Python implementation of linearized optimal transport (LOT) techniques and methods to use in downstream tasks. The pipeline embeds probability distributions into a Hilbert space via the Optimal Transport maps from…

Machine Learning · Statistics 2025-02-06 Jun Linwu , Varun Khurana , Nicholas Karris , Alexander Cloninger

This paper describes a deep-SDM framework, MALPOLON. Written in Python and built upon the PyTorch library, this framework aims to facilitate training and inferences of deep species distribution models (deep-SDM) and sharing for users with…

Machine Learning · Computer Science 2024-09-27 Theo Larcher , Lukas Picek , Benjamin Deneu , Titouan Lorieul , Maximilien Servajean , Alexis Joly

Dirichlet Process Mixtures (DPMs) are a popular class of statistical models to perform density estimation and clustering. However, when the data available have a distribution evolving over time, such models are inadequate. We introduce here…

Methodology · Statistics 2012-06-26 Francois Caron , Manuel Davy , Arnaud Doucet

We introduce SPFlow, an open-source Python library providing a simple interface to inference, learning and manipulation routines for deep and tractable probabilistic models called Sum-Product Networks (SPNs). The library allows one to…

In this work, we present scikit-fingerprints, a Python package for computation of molecular fingerprints for applications in chemoinformatics. Our library offers an industry-standard scikit-learn interface, allowing intuitive usage and easy…

Software Engineering · Computer Science 2025-08-12 Jakub Adamczyk , Piotr Ludynia

With the increasing application of deep learning algorithms to time series classification, especially in high-stake scenarios, the relevance of interpreting those algorithms becomes key. Although research in time series interpretability has…

Machine Learning · Computer Science 2022-08-16 Jacqueline Höllig , Cedric Kulbach , Steffen Thoma

A recent developing trend in clustering is the advancement of algorithms that not only identify clusters within data, but also express and capture the uncertainty of cluster membership. Evidential clustering addresses this by using the…

Software Engineering · Computer Science 2025-02-11 Armel Soubeiga , Violaine Antoine

Recent advances in artificial intelligence research have led to a profusion of studies that apply deep learning to problems in image analysis and natural language processing among others. Additionally, the availability of open-source…

XDeep is an open-source Python package developed to interpret deep models for both practitioners and researchers. Overall, XDeep takes a trained deep neural network (DNN) as the input, and generates relevant interpretations as the output…

Machine Learning · Computer Science 2019-11-05 Fan Yang , Zijian Zhang , Haofan Wang , Yuening Li , Xia Hu

This paper introduces ENFrame, a unified data processing platform for querying and mining probabilistic data. Using ENFrame, users can write programs in a fragment of Python with constructs such as bounded-range loops, list comprehension,…

Databases · Computer Science 2013-09-03 Sebastiaan J. van Schaik , Dan Olteanu , Robert Fink

ProSper is a python library containing probabilistic algorithms to learn dictionaries. Given a set of data points, the implemented algorithms seek to learn the elementary components that have generated the data. The library widens the scope…

Signal Processing · Electrical Eng. & Systems 2019-08-20 Georgios Exarchakis , Jörg Bornschein , Abdul-Saboor Sheikh , Zhenwen Dai , Marc Henniges , Jakob Drefs , Jörg Lücke

This work describes the TrueLearn Python library, which contains a family of online learning Bayesian models for building educational (or more generally, informational) recommendation systems. This family of models was designed following…

Information Retrieval · Computer Science 2023-09-22 Yuxiang Qiu , Karim Djemili , Denis Elezi , Aaneel Shalman , María Pérez-Ortiz , Sahan Bulathwela

Process mining, i.e., a sub-field of data science focusing on the analysis of event data generated during the execution of (business) processes, has seen a tremendous change over the past two decades. Starting off in the early 2000's, with…

Software Engineering · Computer Science 2019-05-16 Alessandro Berti , Sebastiaan J. van Zelst , Wil van der Aalst

This paper presents the philosophy, design and feature-set of Neural Network Distiller, an open-source Python package for DNN compression research. Distiller is a library of DNN compression algorithms implementations, with tools, tutorials…

Machine Learning · Computer Science 2019-10-29 Neta Zmora , Guy Jacob , Lev Zlotnik , Bar Elharar , Gal Novik