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Motivation: Thanks to the recent advances in structural biology, nowadays three-dimensional structures of various proteins are solved on a routine basis. A large portion of these contain structural repetitions or internal symmetries. To…

Quantitative Methods · Quantitative Biology 2018-10-30 Guillaume Pagès , Sergei Grudinin

The theoretical framework, which is built from the first-principles results, is successfully developed for investigating emergent two-dimensional (2D) materials, as it is clearly illustrated by carbon substitution in silicene. Computer…

Computational Physics · Physics 2019-12-03 Hai-Duong Pham , Shih-Yang Lin , Godfrey Gumbs , Nguyen Duy Khanh , Ming-Fa Lin

Most two-dimensional (2D) materials experimentally studied so far have hexagons as their building blocks. Only a few exceptions, such as PdSe2, are lower in energy in pentagonal phases and exhibit pentagons as building blocks. While theory…

Accelerating the discovery of structural materials is essential for applications in hard and refractory alloys, hypersonic platforms, nuclear systems, and other extreme environment technologies. Progress is often constrained by slow…

Materials Science · Physics 2025-12-16 Vivek Chawla , Dayakar Penumadu , Sergei Kalinin

We detail the application of bounding volume hierarchies to accelerate second-virial evaluations for arbitrary complex particles interacting through hard and soft finite-range potentials. This procedure, based on the construction of…

Soft Condensed Matter · Physics 2017-12-14 Maxime M. C. Tortora , Jonathan P. K. Doye

Architected materials can achieve enhanced properties compared to their plain counterparts. Specific architecting serves as a powerful design lever to achieve targeted behavior without changing the base material. Thus, the connection…

Materials Science · Physics 2023-02-14 Andrew J. Lew , Kai Jin , Markus J. Buehler

Optimal recursive decomposition (or DR-planning) is crucial for analyzing, designing, solving or finding realizations of geometric constraint sytems. While the optimal DR-planning problem is NP-hard even for general 2D bar-joint constraint…

Computational Geometry · Computer Science 2015-07-07 Troy Baker , Meera Sitharam , Menghan Wang , Joel Willoughby

The Cairo tessellation refers to a pattern of type 2 pentagons that can pave an infinite plane without creating a gap or overlap. We reveal the hidden, layered Cairo tessellations in the pyrite structure with a general chemical formula of…

Materials Science · Physics 2018-11-14 Lei Liu , Houlong L. Zhuang

We find an infinite number of noncommutative geometries which posses a differential structure. They generalize the two dimensional noncommutative plane, and have infinite dimensional representations. Upon applying generalized coherent…

High Energy Physics - Theory · Physics 2009-11-07 A. Pinzul , A. Stern

Topological materials with unconventional electronic properties have been investigated intensively for both fundamental and practical interests. Thousands of topological materials have been identified by symmetry-based analysis and ab…

Materials Science · Physics 2024-01-26 Haosheng Xu , Yadong Jiang , Huan Wang , Jing Wang

A mixed basis approach based on density functional theory is employed for low dimensional systems. The basis functions are taken to be plane waves for the periodic direction multiplied by B-spline polynomials in the non-periodic direction.…

Computational Physics · Physics 2015-05-20 Chung-Yuan Ren , Chen-Shiung Hsue , Yia-Chung Chang

This document presents a combinatorial framework for analyzing assembly systems using generating functions. We explore the theory through concrete examples, such as linear polymers, and develop recursive equations to characterize valid…

Combinatorics · Mathematics 2025-01-22 Andrés Ortiz-Muñoz

The investigation of magnetic energy landscapes and the search for ground states of magnetic materials using ab initio methods like density functional theory (DFT) is a challenging task. Complex interactions, such as superexchange and…

Materials Science · Physics 2024-12-24 Jakob Baumsteiger , Lorenzo Celiberti , Patrick Rinke , Milica Todorović , Cesare Franchini

High-throughput calculations are a very promising tool for screening a large number of compounds in order to discover new useful materials. Ternary intermetallic are thus investigated in the present work to find new compounds potentially…

Materials Science · Physics 2020-10-22 Celine Barreteau , Jean-Claude Crivello , Jean-Marc Joubert , Eric Alleno

The ability to control forces between sub-micron-scale building blocks offers considerable potential for designing new materials through self-assembly. A typical paradigm is to first identify a particular (crystal) structure that has some…

Soft Condensed Matter · Physics 2024-04-24 Mengjie Zu , Carl Goodrich

Isogeometric cohesive elements are presented for modeling two and three dimensional delaminated composite structures. We exploit the knot insertion algorithm offered by NURBS (Non Uniform Rational B-splines) to generate cohesive elements…

Numerical Analysis · Mathematics 2014-10-07 Vinh Phu Nguyen , Pierre Kerfriden , Stephane Bordas

In geometry processing, symmetry is a universal type of high-level structural information of 3D models and benefits many geometry processing tasks including shape segmentation, alignment, matching, and completion. Thus it is an important…

Graphics · Computer Science 2021-09-15 Lin Gao , Ling-Xiao Zhang , Hsien-Yu Meng , Yi-Hui Ren , Yu-Kun Lai , Leif Kobbelt

Polymers that extend covalently in two dimensions have attracted recent attention as a means of combining the mechanical strength and in-plane energy conduction of conventional two-dimensional (2D) materials with the low densities,…

The ability to automatically discover interpretable mathematical models from data could forever change how we model soft matter systems. For convex discovery problems with a unique global minimum, model discovery is well-established. It…

Soft Condensed Matter · Physics 2024-04-11 Kevin Linka , Ellen Kuhl

Efficient screening of chemicals is essential for exploring new materials. However, the search space is astronomically large, making calculations with conventional computers infeasible. For example, an $N$-component system of organic…

Computational Physics · Physics 2021-01-13 Kan Hatakeyama-Sato , Takahiro Kashikawa , Koichi Kimura , Kenichi Oyaizu
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