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This paper focuses on learning representation on the whole graph level in an unsupervised manner. Learning graph-level representation plays an important role in a variety of real-world issues such as molecule property prediction, protein…

Machine Learning · Computer Science 2024-01-08 Ge Wang , Zelin Zang , Jiangbin Zheng , Jun Xia , Stan Z. Li

Deep clustering has shown its promising capability in joint representation learning and clustering via deep neural networks. Despite the significant progress, the existing deep clustering works mostly utilize some distribution-based…

Computer Vision and Pattern Recognition · Computer Science 2023-10-18 Yuankun Xu , Dong Huang , Chang-Dong Wang , Jian-Huang Lai

Hypergraphs can model higher-order relationships among data objects that are found in applications such as social networks and bioinformatics. However, recent studies on hypergraph learning that extend graph convolutional networks to…

Machine Learning · Computer Science 2024-05-29 Yumeng Song , Yu Gu , Tianyi Li , Jianzhong Qi , Zhenghao Liu , Christian S. Jensen , Ge Yu

Graph Contrastive Learning (GCL) relies on semantically consistent graph augmentations, but common local perturbations provide limited control over global structural consistency, motivating a more principled global augmentation strategy. We…

Machine Learning · Computer Science 2026-05-13 Nero Z. Li , Xuehao Zhai , Zhichao Shi , Boshen Shi , Xuhui Jiang

In this paper, we propose an end-to-end graph learning framework, namely Iterative Deep Graph Learning (IDGL), for jointly and iteratively learning graph structure and graph embedding. The key rationale of IDGL is to learn a better graph…

Machine Learning · Computer Science 2020-10-26 Yu Chen , Lingfei Wu , Mohammed J. Zaki

This study introduces the Multi-Scale Weight-Based Pairwise Coarsening and Contrastive Learning (MPCCL) model, a novel approach for attributed graph clustering that effectively bridges critical gaps in existing methods, including long-range…

Machine Learning · Computer Science 2025-07-29 Binxiong Li , Yuefei Wang , Binyu Zhao , Heyang Gao , Benhan Yang , Quanzhou Luo , Xue Li , Xu Xiang , Yujie Liu , Huijie Tang

Advancements in technologies related to working with omics data require novel computation methods to fully leverage information and help develop a better understanding of human diseases. This paper studies the effects of introducing graph…

Genomics · Quantitative Biology 2023-10-17 Nishant Rajadhyaksha , Aarushi Chitkara

Graph classification is a critical research problem in many applications from different domains. In order to learn a graph classification model, the most widely used supervision component is an output layer together with classification loss…

Machine Learning · Computer Science 2021-01-15 Yuxiang Ren , Jiyang Bai , Jiawei Zhang

Graph contrastive learning (GCL) has been extensively studied and leveraged as a potent tool in recommender systems. Most existing GCL-based recommenders generate contrastive views by altering the graph structure or introducing…

Information Retrieval · Computer Science 2024-09-12 Lijun Zhang , Yuan Yao , Haibo Ye

Pre-training Graph Neural Networks (GNN) via self-supervised contrastive learning has recently drawn lots of attention. However, most existing works focus on node-level contrastive learning, which cannot capture global graph structure. The…

Machine Learning · Computer Science 2021-04-19 Shichang Zhang , Ziniu Hu , Arjun Subramonian , Yizhou Sun

Graph neural networks (GNNs) have attracted widespread attention for their impressive capability of graph representation learning. However, the increasing prevalence of large-scale graphs presents a significant challenge for GNN training…

Machine Learning · Computer Science 2025-05-13 Xinyi Gao , Hongzhi Yin , Tong Chen , Guanhua Ye , Wentao Zhang , Bin Cui

While contrastive self-supervised learning has become the de-facto learning paradigm for graph neural networks, the pursuit of higher task accuracy requires a larger hidden dimensionality to learn informative and discriminative…

Neural and Evolutionary Computing · Computer Science 2024-02-20 Jintang Li , Huizhe Zhang , Ruofan Wu , Zulun Zhu , Baokun Wang , Changhua Meng , Zibin Zheng , Liang Chen

Recent works explore learning graph representations in a self-supervised manner. In graph contrastive learning, benchmark methods apply various graph augmentation approaches. However, most of the augmentation methods are non-learnable,…

Machine Learning · Computer Science 2022-05-30 Hang Gao , Jiangmeng Li , Wenwen Qiang , Lingyu Si , Fuchun Sun , Changwen Zheng

Despite plentiful successes achieved by graph representation learning in various domains, the training of graph neural networks (GNNs) still remains tenaciously challenging due to the tremendous computational overhead needed for sizable…

Machine Learning · Computer Science 2025-05-28 Yurui Lai , Taiyan Zhang , Renchi Yang

How can we find meaningful clusters in a graph robustly against noise edges? Graph clustering (i.e., dividing nodes into groups of similar ones) is a fundamental problem in graph analysis with applications in various fields. Recent studies…

Machine Learning · Computer Science 2023-11-09 Hyeonsoo Jo , Fanchen Bu , Kijung Shin

Graph clustering is a fundamental task which discovers communities or groups in networks. Recent studies have mostly focused on developing deep learning approaches to learn a compact graph embedding, upon which classic clustering methods…

Machine Learning · Computer Science 2019-06-18 Chun Wang , Shirui Pan , Ruiqi Hu , Guodong Long , Jing Jiang , Chengqi Zhang

Graph neural networks (GNNs) have achieved great success in node classification tasks. However, existing GNNs naturally bias towards the majority classes with more labelled data and ignore those minority classes with relatively few labelled…

Machine Learning · Computer Science 2023-06-28 Mengting Zhou , Zhiguo Gong

Graph anomaly detection (GAD) is a vital task in graph-based machine learning and has been widely applied in many real-world applications. The primary goal of GAD is to capture anomalous nodes from graph datasets, which evidently deviate…

Machine Learning · Computer Science 2022-12-05 Jingcan Duan , Siwei Wang , Pei Zhang , En Zhu , Jingtao Hu , Hu Jin , Yue Liu , Zhibin Dong

Graph neural networks (GNNs) have shown advantages in graph-based analysis tasks. However, most existing methods have the homogeneity assumption and show poor performance on heterophilic graphs, where the linked nodes have dissimilar…

Machine Learning · Computer Science 2024-04-16 Tianhao Peng , Wenjun Wu , Haitao Yuan , Zhifeng Bao , Zhao Pengrui , Xin Yu , Xuetao Lin , Yu Liang , Yanjun Pu

Deep graph clustering, which aims to reveal the underlying graph structure and divide the nodes into different clusters without human annotations, is a fundamental yet challenging task. However, we observed that the existing methods suffer…

Computer Vision and Pattern Recognition · Computer Science 2022-02-28 Yue Liu , Sihang Zhou , Xinwang Liu , Wenxuan Tu , Xihong Yang