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Knowledge Graphs (KG) and associated Knowledge Graph Embedding (KGE) models have recently begun to be explored in the context of drug discovery and have the potential to assist in key challenges such as target identification. In the drug…

Biomolecules · Quantitative Biology 2022-06-01 Stephen Bonner , Ian P Barrett , Cheng Ye , Rowan Swiers , Ola Engkvist , Charles Tapley Hoyt , William L Hamilton

Knowledge graphs represent factual knowledge about the world as relationships between concepts and are critical for intelligent decision making in enterprise applications. New knowledge is inferred from the existing facts in the knowledge…

Machine Learning · Computer Science 2022-10-04 Peru Bhardwaj

Knowledge Graph Embedding (KGE) techniques play a pivotal role in transforming symbolic Knowledge Graphs (KGs) into numerical representations, thereby enhancing various deep learning models for knowledge-augmented applications. Unlike…

Machine Learning · Computer Science 2025-03-24 Guanglin Niu

Link prediction is the task of predicting missing connections between entities in the knowledge graph (KG). While various forms of models are proposed for the link prediction task, most of them are designed based on a few known relation…

Computation and Language · Computer Science 2020-08-19 Xiaoyu Kou , Bingfeng Luo , Huang Hu , Yan Zhang

Knowledge graph (KG) entity typing aims at inferring possible missing entity type instances in KG, which is a very significant but still under-explored subtask of knowledge graph completion. In this paper, we propose a novel approach for KG…

Computation and Language · Computer Science 2020-07-22 Yu Zhao , Anxiang Zhang , Ruobing Xie , Kang Liu , Xiaojie Wang

Despite the widespread use of Knowledge Graph Embeddings (KGE), little is known about the security vulnerabilities that might disrupt their intended behaviour. We study data poisoning attacks against KGE models for link prediction. These…

Machine Learning · Computer Science 2021-11-08 Peru Bhardwaj , John Kelleher , Luca Costabello , Declan O'Sullivan

Link prediction with knowledge graphs has been thoroughly studied in graph machine learning, leading to a rich landscape of graph neural network architectures with successful applications. Nonetheless, it remains challenging to transfer the…

Machine Learning · Computer Science 2025-06-10 Xingyue Huang , Miguel Romero Orth , Pablo Barceló , Michael M. Bronstein , İsmail İlkan Ceylan

While Knowledge Graphs (KGs) have become increasingly popular across various scientific disciplines for their ability to model and interlink huge quantities of data, essentially all real-world KGs are known to be incomplete. As such, with…

Machine Learning · Computer Science 2025-05-09 Jeffrey Seathrún Sardina

Transparency and accountability have become major concerns for black-box machine learning (ML) models. Proper explanations for the model behavior increase model transparency and help researchers develop more accountable models. Graph neural…

Machine Learning · Computer Science 2023-05-09 Shichang Zhang , Jiani Zhang , Xiang Song , Soji Adeshina , Da Zheng , Christos Faloutsos , Yizhou Sun

Knowledge graph embedding (KGE) is a technique that enhances knowledge graphs by addressing incompleteness and improving knowledge retrieval. A limitation of the existing KGE models is their underutilization of ontologies, specifically the…

Social and Information Networks · Computer Science 2025-04-07 Takanori Ugai

In recent years, knowledge graphs have gained interest and witnessed widespread applications in various domains, such as information retrieval, question-answering, recommendation systems, amongst others. Large-scale knowledge graphs to this…

Machine Learning · Computer Science 2024-10-29 Arnab Sharma , N'Dah Jean Kouagou , Axel-Cyrille Ngonga Ngomo

Knowledge graph (KG) reasoning is an important problem for knowledge graphs. In this paper, we propose a novel and principled framework called \textbf{RulE} (stands for {Rul}e {E}mbedding) to effectively leverage logical rules to enhance KG…

Artificial Intelligence · Computer Science 2024-05-21 Xiaojuan Tang , Song-Chun Zhu , Yitao Liang , Muhan Zhang

We present a novel extension to embedding-based knowledge graph completion models which enables them to perform open-world link prediction, i.e. to predict facts for entities unseen in training based on their textual description. Our model…

Artificial Intelligence · Computer Science 2020-01-10 Haseeb Shah , Johannes Villmow , Adrian Ulges , Ulrich Schwanecke , Faisal Shafait

Knowledge graph (KG) embedding encodes the entities and relations from a KG into low-dimensional vector spaces to support various applications such as KG completion, question answering, and recommender systems. In real world, knowledge…

Databases · Computer Science 2022-06-02 Tianxing Wu , Arijit Khan , Melvin Yong , Guilin Qi , Meng Wang

Knowledge graph embedding (KGE), aiming to embed entities and relations into low-dimensional vectors, has attracted wide attention recently. However, the existing research is mainly based on the black-box neural models, which makes it…

Computation and Language · Computer Science 2020-11-13 Xiaoyu Kou , Yankai Lin , Yuntao Li , Jiahao Xu , Peng Li , Jie Zhou , Yan Zhang

Knowledge graph embeddings (KGE) apply machine learning methods on knowledge graphs (KGs) to provide non-classical reasoning capabilities based on similarities and analogies. The learned KG embeddings are typically used to answer queries by…

Artificial Intelligence · Computer Science 2025-01-28 Yuqicheng Zhu , Nico Potyka , Jiarong Pan , Bo Xiong , Yunjie He , Evgeny Kharlamov , Steffen Staab

Knowledge graphs are large, useful, but incomplete knowledge repositories. They encode knowledge through entities and relations which define each other through the connective structure of the graph. This has inspired methods for the joint…

Artificial Intelligence · Computer Science 2018-03-05 Bhushan Kotnis , Vivi Nastase

We study the problem of learning representations of entities and relations in knowledge graphs for predicting missing links. The success of such a task heavily relies on the ability of modeling and inferring the patterns of (or between) the…

Machine Learning · Computer Science 2019-02-28 Zhiqing Sun , Zhi-Hong Deng , Jian-Yun Nie , Jian Tang

The objective of knowledge graph embedding is to encode both entities and relations of knowledge graphs into continuous low-dimensional vector spaces. Previously, most works focused on symbolic representation of knowledge graph with…

Computation and Language · Computer Science 2016-12-14 Jiacheng Xu , Kan Chen , Xipeng Qiu , Xuanjing Huang

Among the top approaches of recent years, link prediction using knowledge graph embedding (KGE) models has gained significant attention for knowledge graph completion. Various embedding models have been proposed so far, among which, some…

Artificial Intelligence · Computer Science 2021-06-01 Chengjin Xu , Mojtaba Nayyeri , Sahar Vahdati , Jens Lehmann