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Although link prediction on graphs has achieved great success with the development of graph neural networks (GNNs), the potential robustness under the edge noise is still less investigated. To close this gap, we first conduct an empirical…

Machine Learning · Computer Science 2023-11-03 Zhanke Zhou , Jiangchao Yao , Jiaxu Liu , Xiawei Guo , Quanming Yao , Li He , Liang Wang , Bo Zheng , Bo Han

Graph Neural Networks (GNNs) often struggle with heterophilic data, where connected nodes may have dissimilar labels, as they typically assume homophily and rely on local message passing. To address this, we propose creating alternative…

Machine Learning · Computer Science 2025-06-11 Victor M. Tenorio , Madeline Navarro , Samuel Rey , Santiago Segarra , Antonio G. Marques

Graph embedding methods aim at finding useful graph representations by mapping nodes to a low-dimensional vector space. It is a task with important downstream applications, such as link prediction, graph reconstruction, data visualization,…

Machine Learning · Computer Science 2022-09-13 Said Kerrache , Hafida Benhidour

Graph neural networks (GNN) have shown great advantages in many graph-based learning tasks but often fail to predict accurately for a task-based on sets of nodes such as link/motif prediction and so on. Many works have recently proposed to…

Machine Learning · Computer Science 2022-06-24 Haorui Wang , Haoteng Yin , Muhan Zhang , Pan Li

Uncovering rationales behind predictions of graph neural networks (GNNs) has received increasing attention over recent years. Instance-level GNN explanation aims to discover critical input elements, like nodes or edges, that the target GNN…

Machine Learning · Computer Science 2022-12-20 Tianxiang Zhao , Dongsheng Luo , Xiang Zhang , Suhang Wang

Subgraph matching is to find all subgraphs in a data graph that are isomorphic to an existing query graph. Subgraph matching is an NP-hard problem, yet has found its applications in many areas. Many learning-based methods have been proposed…

Discrete Mathematics · Computer Science 2022-11-09 Zixun Lan , Ye Ma , Limin Yu , LingLong Yuan , Fei Ma

There has been a recent surge of interest in designing Graph Neural Networks (GNNs) for semi-supervised learning tasks. Unfortunately this work has assumed that the nodes labeled for use in training were selected uniformly at random (i.e.…

Machine Learning · Computer Science 2021-10-28 Qi Zhu , Natalia Ponomareva , Jiawei Han , Bryan Perozzi

Counterfactual learning is emerging as an important paradigm, rooted in causality, which promises to alleviate common issues of graph neural networks (GNNs), such as fairness and interpretability. However, as in many real-world application…

Machine Learning · Computer Science 2025-06-03 Dazhuo Qiu , Jinwen Chen , Arijit Khan , Yan Zhao , Francesco Bonchi

In the active research area of employing embedding models for knowledge graph completion, particularly for the task of link prediction, most prior studies used two benchmark datasets FB15k and WN18 in evaluating such models. Most triples in…

Artificial Intelligence · Computer Science 2020-03-19 Farahnaz Akrami , Mohammed Samiul Saeef , Qingheng Zhang , Wei Hu , Chengkai Li

Oversampling is a common characteristic of data representing dynamic networks. It introduces noise into representations of dynamic networks, but there has been little work so far to compensate for it. Oversampling can affect the quality of…

Social and Information Networks · Computer Science 2015-08-12 Benjamin Fish , Rajmonda S. Caceres

Link prediction in structured-data is an important problem for many applications, especially for recommendation systems. Existing methods focus on how to learn the node representation based on graph-based structure. High-dimensional sparse…

Social and Information Networks · Computer Science 2021-12-28 Yifei Zhao , Mingdong Ou , Rongzhi Zhang , Meng Li

Link prediction in heterogeneous networks is crucial for understanding the intricacies of network structures and forecasting their future developments. Traditional methodologies often face significant obstacles, including…

Computational Engineering, Finance, and Science · Computer Science 2025-01-07 Shengming Zhang , Le Zhang , Jingbo Zhou , Hui Xiong

This paper derives statistical guarantees for the performance of Graph Neural Networks (GNNs) in link prediction tasks on graphs generated by a graphon. We propose a linear GNN architecture (LG-GNN) that produces consistent estimators for…

Machine Learning · Computer Science 2024-02-08 Alan Chung , Amin Saberi , Morgane Austern

Graph neural networks (GNNs) have emerged as the mainstream paradigm for graph representation learning due to their effective message aggregation. However, this advantage also amplifies biases inherent in graph topology, raising fairness…

Machine Learning · Computer Science 2025-11-18 Zhenqiang Ye , Jinjie Lu , Tianlong Gu , Fengrui Hao , Xuemin Wang

Recently, deep learning methods have made great progress in traffic prediction, but their performance depends on a large amount of historical data. In reality, we may face the data scarcity issue. In this case, deep learning models fail to…

Machine Learning · Computer Science 2022-07-05 Xueyan Yin , Feifan Li , Yanming Shen , Heng Qi , Baocai Yin

To enhance documentation and maintenance practices, developers conventionally establish links between related software artifacts manually. Empirical research has revealed that developers frequently overlook this practice, resulting in…

Software Engineering · Computer Science 2023-04-25 Maliheh Izadi , Pooya Rostami Mazrae , Tom Mens , Arie van Deursen

We define and study the link prediction problem in bipartite networks, specializing general link prediction algorithms to the bipartite case. In a graph, a link prediction function of two vertices denotes the similarity or proximity of the…

Machine Learning · Computer Science 2010-07-27 Jérôme Kunegis , Ernesto W. De Luca , Sahin Albayrak

Recently, significant attention has been given to the idea of viewing relational databases as heterogeneous graphs, enabling the application of graph neural network (GNN) technology for predictive tasks. However, existing GNN methods…

Machine Learning · Computer Science 2025-02-26 Francesco Ferrini , Antonio Longa , Andrea Passerini , Manfred Jaeger

Despite the enormous success of graph neural networks (GNNs), most existing GNNs can only be applicable to undirected graphs where relationships among connected nodes are two-way symmetric (i.e., information can be passed back and forth).…

Machine Learning · Computer Science 2021-10-15 Zhuo Tan , Bin Liu , Guosheng Yin

Graph Neural Networks (GNNs) have shown promising results in modeling graphs in various tasks. The training of GNNs, especially on specialized tasks such as bioinformatics, demands extensive expert annotations, which are expensive and…

Machine Learning · Computer Science 2025-05-27 Minhua Lin , Enyan Dai , Junjie Xu , Jinyuan Jia , Xiang Zhang , Suhang Wang