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The Extended Evolutionary Synthesis (EES) is beginning to fulfill the whole promise of Darwinian insight through its extension of evolutionary understanding from the biological domain to include cultural information evolution. Several…

Populations and Evolution · Quantitative Biology 2019-07-17 Cameron M. Smith , Liane Gabora , William Gardner-O'Kearney

Evolutionary algorithms (EAs) are general-purpose problem solvers that usually perform an unbiased search. This is reasonable and desirable in a black-box scenario. For combinatorial optimization problems, often more knowledge about the…

Neural and Evolutionary Computing · Computer Science 2020-04-23 Vahid Roostapour , Jakob Bossek , Frank Neumann

How do mammalian cells that share the same genome exist in notably distinct phenotypes, exhibiting differences in morphology, gene expression patterns, and epigenetic chromatin statuses? Furthermore how do cells of different phenotypes…

Molecular Networks · Quantitative Biology 2015-04-27 Jianhua Xing , Jin Yu , Hang Zhang , Xiao-Jun Tian

Two meta-evolutionary optimization strategies described in this paper accelerate the convergence of evolutionary programming algorithms while still retaining much of their ability to deal with multi-modal problems. The strategies, called…

Neural and Evolutionary Computing · Computer Science 2009-03-26 Ted Dunning

Evolution Strategies (ESs) have recently become popular for training deep neural networks, in particular on reinforcement learning tasks, a special form of controller design. Compared to classic problems in continuous direct search, deep…

Neural and Evolutionary Computing · Computer Science 2018-07-03 Nils Müller , Tobias Glasmachers

Evolutionary Computation algorithms have been used to solve optimization problems in relation with architectural, hyper-parameter or training configuration, forging the field known today as Neural Architecture Search. These algorithms have…

Neural and Evolutionary Computing · Computer Science 2024-02-06 Javier Poyatos , Daniel Molina , Aitor Martínez , Javier Del Ser , Francisco Herrera

The model of interaction between learning and evolutionary optimization is designed and investigated. The evolving population of modeled organisms is considered. The mechanism of the genetic assimilation of the acquired features during a…

Neural and Evolutionary Computing · Computer Science 2014-11-20 Vladimir G. Red'ko

In the real world, there exist a class of optimization problems that multiple (local) optimal solutions in the solution space correspond to a single point in the objective space. In this paper, we theoretically show that for such multimodal…

Neural and Evolutionary Computing · Computer Science 2024-06-06 Shengjie Ren , Zhijia Qiu , Chao Bian , Miqing Li , Chao Qian

Characterization of pluripotent states, in which cells can both self-renew and differentiate, and the irreversible loss of pluripotency are important research areas in developmental biology. In particular, an understanding of these…

Molecular Networks · Quantitative Biology 2015-09-02 Tadashi Miyamoto , Chikara Furusawa , Kunihiko Kaneko

Epigenetic Tracking is a mathematical model of biological cells, originally conceived to study embryonic development. Computer simulations proved the capacity of the model to generate complex 3-dimensional cellular structures, and the…

Cell Behavior · Quantitative Biology 2015-07-07 Alessandro Fontana

A variety of clustering criteria has been applied as an objective function in Evolutionary Multi-Objective Clustering approaches (EMOCs). However, most EMOCs do not provide detailed analysis regarding the choice and usage of the objective…

Neural and Evolutionary Computing · Computer Science 2022-06-22 Cristina Y. Morimoto , Aurora Pozo , Marcílio C. P. de Souto

Optimization benchmarks play a fundamental role in assessing algorithm performance; however, existing artificial benchmarks often fail to capture the diversity and irregularity of real-world problem structures, while benchmarks derived from…

Neural and Evolutionary Computing · Computer Science 2026-01-26 Yuhiro Ono , Tomohiro Harada , Yukiya Miura

Until recently, the potential to transfer evolved skills across distinct optimization problem instances (or tasks) was seldom explored in evolutionary computation. The concept of evolutionary multitasking (EMT) fills this gap. It unlocks a…

Neural and Evolutionary Computing · Computer Science 2022-03-23 Abhishek Gupta , Lei Zhou , Yew-Soon Ong , Zefeng Chen , Yaqing Hou

Microbial communities are ubiquitous in nature and come in a multitude of forms, ranging from communities dominated by a handful of species to communities containing a wide variety of metabolically distinct organisms. This huge range in…

Biological Physics · Physics 2021-11-02 Amir Erez , Jaime G. Lopez , Yigal Meir , Ned S. Wingreen

Reinforcement learning techniques achieved human-level performance in several tasks in the last decade. However, in recent years, the need for interpretability emerged: we want to be able to understand how a system works and the reasons…

Machine Learning · Computer Science 2023-01-13 Leonardo Lucio Custode , Giovanni Iacca

Adaptation mechanism of cells on the basis of stochastic gene expression and epigenetic modification is proposed. From marginally stable states generated by epigenetic modification, a gene expression pattern that achieves greater cell…

Molecular Networks · Quantitative Biology 2019-01-18 Yusuke Himeoka , Kunihiko Kaneko

An impulsive model of augmentative biological control consisting of a general continuous predator-prey model in ordinary differential equations augmented by a discrete part describing periodic introductions of predators is considered. It is…

Optimization and Control · Mathematics 2009-09-29 Ludovic Mailleret , Frédéric Grognard

Dynamic and multimodal features are two important properties and widely existed in many real-world optimization problems. The former illustrates that the objectives and/or constraints of the problems change over time, while the latter means…

Neural and Evolutionary Computing · Computer Science 2022-01-07 Wenjian Luo , Xin Lin , Changhe Li , Shengxiang Yang , Yuhui Shi

Meta-learning models, or models that learn to learn, have been a long-desired target for their ability to quickly solve new tasks. Traditional meta-learning methods can require expensive inner and outer loops, thus there is demand for…

Neural and Evolutionary Computing · Computer Science 2021-03-12 Kevin Frans , Olaf Witkowski

Multitasking optimization is an emerging research field which has attracted lot of attention in the scientific community. The main purpose of this paradigm is how to solve multiple optimization problems or tasks simultaneously by conducting…

Neural and Evolutionary Computing · Computer Science 2020-06-30 Eneko Osaba , Javier Del Ser , Xin-She Yang , Andres Iglesias , Akemi Galvez