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Catalytically active colloids maintain non-equilibrium conditions in which they produce and deplete chemicals and hence effectively act as sources and sinks of molecules. While individual colloids that are symmetrically coated do not…

Soft Condensed Matter · Physics 2015-06-11 Rodrigo Soto , Ramin Golestanian

The dynamical properties of classical fluids at pico-liter scale attract experimentally and theoretically much attention in the soft-matter and biophysics communities, due to the appearance of the microfluidics, also called 'lab-on-a-chip',…

Statistical Mechanics · Physics 2007-05-23 F. Penna , P. Tarazona

We study experimentally a sediment of self-propelled Brownian particles with densities ranging from dilute to ergodic supercooled, to nonergodic glass, to nonergodic polycrystal. In a compagnon letter, we observe a nonmonotonic response to…

Soft Condensed Matter · Physics 2019-12-18 Natsuda Klongvessa , Félix Ginot , Christophe Ybert , Cécile Cottin-Bizonne , Mathieu Leocmach

The effects of intrinsic noise on stochastic delay systems is studied within an expansion in the inverse system size. We show that the stochastic nature of the underlying dynamics may induce oscillatory behaviour in parameter ranges where…

Molecular Networks · Quantitative Biology 2015-05-13 Tobias Galla

In this work we study the noise induced effects on the dynamics of short polymers crossing a potential barrier, in the presence of a metastable state. An improved version of the Rouse model for a flexible polymer has been adopted to mimic…

Statistical Mechanics · Physics 2009-11-13 N. Pizzolato , A. Fiasconaro , B. Spagnolo

The interaction of a suspension of rotating colloids with a periodically patterned structure is here investigated by means of continuum theoretical predictions and hydrodynamic simulations. Close to the obstacle surface, rotors circulate…

Statistical Mechanics · Physics 2025-08-22 Joscha Mecke , Yongxiang Gao , Marisol Ripoll

We study a model for the collective behavior of self-propelled particles subject to pairwise copying interactions and noise. Particles move at a constant speed $v$ on a two--dimensional space and, in a single step of the dynamics, each…

Physics and Society · Physics 2021-09-15 Ernesto S. Loscar , Gabriel Baglietto , Federico Vazquez

We investigate the effect of noisy feed rates on the behavior of a cubic autocatalytic chemical reaction model. By combining the renormalization group and stoichiometric network analysis, we demonstrate how externally adjustable random…

Statistical Mechanics · Physics 2018-12-21 Jean-Sebastien Gagnon , David Hochberg , Juan Perez-Mercader

Molecular noise in gene regulatory networks has two intrinsic components, one part being due to fluctuations caused by the birth and death of protein or mRNA molecules which are often present in small numbers and the other part arising from…

Molecular Networks · Quantitative Biology 2015-11-17 Davit A. Potoyan , Peter G. Wolynes

Field induced assembly of reconfigurable structures with complex hierarchical configurations has recently become an area of intense research with the promise for exciting applications in programmable self-assembly and nano/microstructure…

Soft Condensed Matter · Physics 2026-01-14 Indira Barros , Sayanth Ramachandran , Indrani Chakraborty

We analyze order-disorder phase transitions driven by noise that occur in two kinds of network models closely related to the self-propelled model proposed by Vicsek et. al. to describe the collective motion of groups of organisms…

Disordered Systems and Neural Networks · Physics 2008-02-27 Jaime A. Pimentel , Maximino Aldana , Cristián Huepe , Hernán Larralde

Conformational barcodes tag functional sites of proteins, and are decoded by interacting molecules transmitting the incoming signal. Conformational barcodes are modified by all co-occurring allosteric events induced by post-translational…

Molecular Networks · Quantitative Biology 2014-06-27 Kristof Z. Szalay , Ruth Nussinov , Peter Csermely

We investigate the transport properties of particles driven by colored noise in a flashing ratchet potential, focusing on both non-interacting and single-file interacting regimes. The model incorporates memory effects via a non-Markovian…

Soft Condensed Matter · Physics 2025-12-18 Karina I. Mazzitello , Daniel G. Zarlenga , Constancio M. Arizmendi

This paper is concerned with stochastic reaction-diffusion kinetics governed by the reaction-diffusion master equation. Specifically, the primary goal of this paper is to provide a mechanistic basis of Turing pattern formation that is…

Quantitative Methods · Quantitative Biology 2015-04-23 Yutaka Hori , Shinji Hara

The stochastic dynamics of colloidal particles with surface activity--in the form of catalytic reaction or particle release--and self-phoretic effects is studied analytically. Three different time scales corresponding to inertial effects,…

Soft Condensed Matter · Physics 2015-05-13 Ramin Golestanian

Designing protocols to dynamically direct the self-assembly of colloidal particles has become an important direction in soft matter physics because of the promising applications in fabrication of dynamic responsive functional materials.…

Soft Condensed Matter · Physics 2017-11-06 Zhan Ma , Qun-li Lei , Ran Ni

We study the statistical physics of a surprising phenomenon arising in large networks of excitable elements in response to noise: while at low noise, solutions remain in the vicinity of the resting state and large-noise solutions show…

Adaptation and Self-Organizing Systems · Physics 2020-04-01 Jonathan D. Touboul , Charlotte Piette , Laurent Venance , G. Bard Ermentrout

A variety of living and non-living systems exhibit collective motion. From swarm robotics to bacterial swarms, and tissue wound healing to human crowds, examples of collective motion are highly diverse but all of them share the common…

Biological Physics · Physics 2023-07-12 Jonathan E. Dawson , Abdul N. Malmi-Kakkada

We consider properties of one-dimensional diffusive dichotomous flow and discuss effects of resonant activation in the presence of statistically independent random resetting mechanism. Resonant activation and stochastic resetting are two…

Statistical Mechanics · Physics 2021-06-30 Karol Capała , Bartłomiej Dybiec , Ewa Gudowska-Nowak

Phenotypic noise underpins homeostasis and fitness of individual cells. Yet, the extent to which noise shapes cell-to-population properties in microbial active matter remains poorly understood. By quantifying variability in confluent…

Biological Physics · Physics 2023-11-07 Jayabrata Dhar , Anh L. P. Thai , Arkajyoti Ghoshal , Luca Giomi , Anupam Sengupta