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Accurate prediction of cancer type and primary tumor site is critical for effective diagnosis, personalized treatment, and improved outcomes. Traditional models struggle with the complexity of genomic and clinical data, but quantum…

Quantitative Methods · Quantitative Biology 2025-06-30 Don Roosan , Rubayat Khan , Md Rahatul Ashakin , Tiffany Khou , Saif Nirzhor , Mohammad Rifat Haider

Spiking Neural Networks (SNNs) have been recently integrated into Transformer architectures due to their potential to reduce computational demands and to improve power efficiency. Yet, the implementation of the attention mechanism using…

Hardware Architecture · Computer Science 2024-11-12 Zihang Song , Prabodh Katti , Osvaldo Simeone , Bipin Rajendran

In recent years, self-attention has become the dominant paradigm for sequence modeling in a variety of domains. However, in domains with very long sequence lengths the $\mathcal{O}(T^2)$ memory and $\mathcal{O}(T^2 H)$ compute costs can…

Machine Learning · Computer Science 2023-06-01 Mohammad Mahmudul Alam , Edward Raff , Stella Biderman , Tim Oates , James Holt

Spectral Graph Neural Networks have demonstrated superior performance in graph representation learning. However, many current methods focus on employing shared polynomial coefficients for all nodes, i.e., learning node-unified filters,…

Machine Learning · Computer Science 2024-07-22 Jiahong Ma , Mingguo He , Zhewei Wei

Transformers have achieved widespread success in computer vision. At their heart, there is a Self-Attention (SA) mechanism, an inductive bias that associates each token in the input with every other token through a weighted basis. The…

Computer Vision and Pattern Recognition · Computer Science 2023-08-16 Anahita Nekoozadeh , Mohammad Reza Ahmadzadeh , Zahra Mardani

In the Transformer model, "self-attention" combines information from attended embeddings into the representation of the focal embedding in the next layer. Thus, across layers of the Transformer, information originating from different tokens…

Machine Learning · Computer Science 2020-06-02 Samira Abnar , Willem Zuidema

In pursuit of faster computation, Efficient Transformers demonstrate an impressive variety of approaches -- models attaining sub-quadratic attention complexity can utilize a notion of sparsity or a low-rank approximation of inputs to reduce…

Machine Learning · Computer Science 2022-11-09 Uladzislau Yorsh , Alexander Kovalenko

Attention-based Transformers have demonstrated strong adaptability across a wide range of tasks and have become the backbone of modern Large Language Models (LLMs). However, their underlying mechanisms remain open for further exploration.…

Machine Learning · Computer Science 2026-01-13 Ruifeng Ren , Sheng Ouyang , Huayi Tang , Yong Liu

Recent advances in machine learning have facilitated numerically accurate solution of the electronic Schr\"{o}dinger equation (SE) by integrating various neural network (NN)-based wavefunction ansatzes with variational Monte Carlo methods.…

Chemical Physics · Physics 2024-12-13 Yaolong Zhang , Bin Jiang , Hua Guo

Quantum convolutional neural networks (QCNNs) have gathered attention as one of the most promising algorithms for quantum machine learning. Reduction in the cost of training as well as improvement in performance is required for practical…

In this work, we propose a technique for the use of fermionic neural networks (FermiNets) with the Slater exponential Ansatz for electron-nuclear and electron-electron distances, which provides faster convergence of target ground-state…

Quantum Physics · Physics 2023-08-15 Denis Bokhan , Aleksey S. Boev , Aleksey K. Fedorov , Dmitrii N. Trubnikov

Transformer models have achieved remarkable results in a wide range of applications. However, their scalability is hampered by the quadratic time and memory complexity of the self-attention mechanism concerning the sequence length. This…

Machine Learning · Computer Science 2024-02-27 Yury Nahshan , Joseph Kampeas , Emir Haleva

Recently, Transformers have shown promising performance in various vision tasks. To reduce the quadratic computation complexity caused by the global self-attention, various methods constrain the range of attention within a local region to…

Computer Vision and Pattern Recognition · Computer Science 2021-12-30 Sitong Wu , Tianyi Wu , Haoru Tan , Guodong Guo

State-of-the-art transformer models use pairwise dot-product based self-attention, which comes at a computational cost quadratic in the input sequence length. In this paper, we investigate the global structure of attention scores computed…

Machine Learning · Computer Science 2021-06-17 Srinadh Bhojanapalli , Ayan Chakrabarti , Himanshu Jain , Sanjiv Kumar , Michal Lukasik , Andreas Veit

Recent advances in Transformer-based Neural Operators have enabled significant progress in data-driven solvers for Partial Differential Equations (PDEs). Most current research has focused on reducing the quadratic complexity of attention to…

Machine Learning · Computer Science 2026-01-08 Wenjie Hu , Sidun Liu , Peng Qiao , Zhenglun Sun , Yong Dou

Accurate atomistic biomolecular simulations are vital for disease mechanism understanding, drug discovery, and biomaterial design, but existing simulation methods exhibit significant limitations. Classical force fields are efficient but…

Deep learning employs multi-layer neural networks trained via the backpropagation algorithm. This approach has achieved success across many domains and relies on adaptive gradient methods such as the Adam optimizer. Sequence modeling…

Machine Learning · Computer Science 2025-07-16 Esmail Gumaan

Transformers have revolutionized deep learning in numerous fields, including natural language processing, computer vision, and audio processing. Their strength lies in their attention mechanism, which allows for the discovering of complex…

Machine Learning · Computer Science 2024-04-02 Uladzislau Yorsh , Martin Holeňa , Ondřej Bojar , David Herel

Modern computational organic chemistry is becoming increasingly data-driven. There remain a large number of important unsolved problems in this area such as product prediction given reactants, drug discovery, and metric-optimized molecule…

Biomolecules · Quantitative Biology 2026-02-10 Josh Payne , Mario Srouji , Dian Ang Yap , Vineet Kosaraju

The dot product attention mechanism, originally designed for natural language processing tasks, is a cornerstone of modern Transformers. It adeptly captures semantic relationships between word pairs in sentences by computing a similarity…

Disordered Systems and Neural Networks · Physics 2025-01-14 Riccardo Rende , Luciano Loris Viteritti