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Modern research heavily relies on software. A significant challenge researchers face is understanding the complex software used in specific research fields. We target two scenarios in this context, namely long onboarding times for newcomers…

Software Engineering · Computer Science 2026-04-14 Adrian Bajraktari , Andreas Vogelsang

Machine learning (ML) models show strong promise for new biomedical prediction tasks, but concerns about trustworthiness have hindered their clinical adoption. In particular, it is often unclear whether a model relies on true clinical cues…

Machine Learning · Computer Science 2026-01-13 Dushan N. Wadduwage , Dineth Jayakody , Leonidas Zimianitis

Objective: Randomized controlled trial (RCT) results often inform clinical decision-making, but the highly curated populations of trials and the care provided during the trial are often not reflective of real-world practice. The objective…

Applications · Statistics 2024-02-26 Guanbo Wang , Ting-Wei Ernie Liao , David Furfaro , Leo Anthony Celi , Kevin Sheng-Kai Ma

End-to-end text image translation (TIT), which aims at translating the source language embedded in images to the target language, has attracted intensive attention in recent research. However, data sparsity limits the performance of…

Computation and Language · Computer Science 2022-10-11 Cong Ma , Yaping Zhang , Mei Tu , Xu Han , Linghui Wu , Yang Zhao , Yu Zhou

As part of a larger project on optimal learning conditions in neural machine translation, we investigate characteristic training phases of translation engines. All our experiments are carried out using OpenNMT-Py: the pre-processing step is…

Computation and Language · Computer Science 2020-12-11 Maria Zimina-Poirot , Nicolas Ballier , Jean-Baptiste Yunès

AI-assisted gait analysis holds promise for improving Parkinson's Disease (PD) care, but current clinical dashboards lack transparency and offer no meaningful way for clinicians to interrogate or contest AI decisions. To address this issue,…

Human-Computer Interaction · Computer Science 2025-12-11 Loc Phuc Truong Nguyen , Hung Thanh Do , Hung Truong Thanh Nguyen , Hung Cao

Machine translation (MT) has become indispensable for cross-border communication in globalized industries like e-commerce, finance, and legal services, with recent advancements in large language models (LLMs) significantly enhancing…

With the rapid development of biomedical software and hardware, a large amount of relational data interlinking genes, proteins, chemical components, drugs, diseases, and symptoms has been collected for modern biomedical research. Many…

Artificial Intelligence · Computer Science 2021-01-21 Yankai Chen , Yaozu Wu , Shicheng Ma , Irwin King

Ensuring consistency between research papers and their corresponding software code implementations is a fundamental prerequisite for guaranteeing the reproducibility of scientific findings and the reliability of software systems. However,…

Machine Learning · Computer Science 2026-05-01 Tianxiang Xu , Xiaoyan Zhu , Xin Lai , Sizhe Dang , Xin Lian , Hangyu Cheng , Jiayin Wang

Researchers may describe different aspects of past scientific publications in their publications and the descriptions may keep changing in the evolution of science. The diverse and changing descriptions (i.e., citation context) on a…

Digital Libraries · Computer Science 2017-11-17 Jiangen He , Chaomei Chen

In the era of precision medicine, more and more clinical trials are now driven or guided by biomarkers, which are patient characteristics objectively measured and evaluated as indicators of normal biological processes, pathogenic processes,…

Methodology · Statistics 2024-01-02 Hong Zhang , Jie Pu , Shibing Deng , Satrajit Roychoudhury , Haitao Chu , Douglas Robinson

Persistent homology (PH) is a method used in topological data analysis (TDA) to study qualitative features of data that persist across multiple scales. It is robust to perturbations of input data, independent of dimensions and coordinates,…

Algebraic Topology · Mathematics 2017-09-13 Nina Otter , Mason A. Porter , Ulrike Tillmann , Peter Grindrod , Heather A. Harrington

We describe a set of bilingual English--French and English--German parallel corpora in which the direction of translation is accurately and reliably annotated. The corpora are diverse, consisting of parliamentary proceedings, literary…

Computation and Language · Computer Science 2016-03-08 Ella Rabinovich , Shuly Wintner , Ofek Luis Lewinsohn

Large language model (LLM)-based agents increasingly rely on tool use to complete real-world tasks. While existing works evaluate the LLMs' tool use capability, they largely focus on the final answers yet overlook the detailed tool usage…

New medical treatment development requires multiple phases of clinical trials. Despite the significant human and financial costs of bringing a drug to market, less than 20% of drugs in testing will make it from the first phase to final…

Computation and Language · Computer Science 2024-08-21 Michael Reinisch , Jianfeng He , Chenxi Liao , Sauleh Ahmad Siddiqui , Bei Xiao

Scientific novelty is a critical construct in bibliometrics and is commonly measured by aggregating pairwise distances between the knowledge units underlying a paper. While prior work has refined how such distances are computed, less…

Digital Libraries · Computer Science 2026-02-09 Yi Xiang , Pascal Welke , Chengzhi Zhang , Jian Wang

Predicting the impact of publications in science and technology has become an important research area, which is useful in various real world scenarios such as technology investment, research direction selection, and technology policymaking.…

Artificial Intelligence · Computer Science 2022-10-04 Chang Zong , Yueting Zhuang , Weiming Lu , Jian Shao , Siliang Tang

Medical text embedding models are foundational to a wide array of healthcare applications, ranging from clinical decision support and biomedical information retrieval to medical question answering, yet they remain hampered by two critical…

Computation and Language · Computer Science 2025-08-07 Mohammad Khodadad , Ali Shiraee Kasmaee , Mahdi Astaraki , Hamidreza Mahyar

Medical language processing and deep learning techniques have emerged as critical tools for improving healthcare, particularly in the analysis of medical imaging and medical text data. These multimodal data fusion techniques help to improve…

Computation and Language · Computer Science 2025-04-28 Sayeh Gholipour Picha , Dawood Al Chanti , Alice Caplier

Detecting the translation direction of parallel text has applications for machine translation training and evaluation, but also has forensic applications such as resolving plagiarism or forgery allegations. In this work, we explore an…

Computation and Language · Computer Science 2025-05-29 Michelle Wastl , Jannis Vamvas , Rico Sennrich