Related papers: An Algorithmic Bridge Between Hamming and Levensht…
We study two fundamental problems in communication, Document Exchange (DE) and Error Correcting Code (ECC). In the first problem, two parties hold two strings, and one party tries to learn the other party's string through communication. In…
In this paper, we study edit distance (ED) and longest common subsequence (LCS) in the asymmetric streaming model, introduced by Saks and Seshadhri [SS13]. As an intermediate model between the random access model and the streaming model,…
Given a stream of items each associated with a numerical value, its edit distance to monotonicity is the minimum number of items to remove so that the remaining items are non-decreasing with respect to the numerical value. The space…
We consider approximate circular pattern matching (CPM, in short) under the Hamming and edit distance, in which we are given a length-$n$ text $T$, a length-$m$ pattern $P$, and a threshold $k>0$, and we are to report all starting positions…
The present paper mainly studies limits and constructions of insertion and deletion (insdel for short) codes. The paper can be divided into two parts. The first part focuses on various bounds, while the second part concentrates on…
In this paper, we provide a method for determining the asymptotic value of the maximum edit distance from a given hereditary property. This method permits the edit distance to be computed without using Szemer\'edi's Regularity Lemma…
We study the task, for a given language $L$, of enumerating the (generally infinite) sequence of its words, without repetitions, while bounding the delay between two consecutive words. To allow for delay bounds that do not depend on the…
Tree edit distance is a well-studied measure of dissimilarity between rooted trees with node labels. It can be computed in $O(n^3)$ time [Demaine, Mozes, Rossman, and Weimann, ICALP 2007], and fine-grained hardness results suggest that the…
Edit distance between trees is a natural generalization of the classical edit distance between strings, in which the allowed elementary operations are contraction, uncontraction and relabeling of an edge. Demaine et al. [ACM Trans. on…
Real-world data often comes in compressed form. Analyzing compressed data directly (without decompressing it) can save space and time by orders of magnitude. In this work, we focus on fundamental sequence comparison problems and try to…
An added edge to a graph is called an inset edge. Predicting k inset edges which minimize the average distance of a graph is known to be NP-Hard. When k = 1 the complexity of the problem is polynomial. In this paper, we further find the…
The Wasserstein distance received a lot of attention recently in the community of machine learning, especially for its principled way of comparing distributions. It has found numerous applications in several hard problems, such as domain…
Text similarity calculation is a fundamental problem in natural language processing and related fields. In recent years, deep neural networks have been developed to perform the task and high performances have been achieved. The neural…
The graph edit distance is an intuitive measure to quantify the dissimilarity of graphs, but its computation is NP-hard and challenging in practice. We introduce methods for answering nearest neighbor and range queries regarding this…
Many problems that can be solved in quadratic time have bit-parallel speed-ups with factor $w$, where $w$ is the computer word size. For example, edit distance of two strings of length $n$ can be solved in $O(n^2/w)$ time. In a reasonable…
Computing efficiently a robust measure of similarity or dissimilarity between graphs is a major challenge in Pattern Recognition. The Graph Edit Distance (GED) is a flexible measure of dissimilarity between graphs which arises in…
String consensus problems aim at finding a string that minimizes some given distance with respect to an input set of strings. In particular, in the Closest string problem, we are given a set of strings of equal length and a radius $d$. The…
We propose a fast, distance-preserving, binary embedding algorithm to transform a high-dimensional dataset $\mathcal{T}\subseteq\mathbb{R}^n$ into binary sequences in the cube $\{\pm 1\}^m$. When $\mathcal{T}$ consists of well-spread (i.e.,…
In minimum-cost inverse optimization problems, we are given a feasible solution to an underlying optimization problem together with a linear cost function, and the goal is to modify the costs by a small deviation vector so that the input…
The OneMax problem, alternatively known as the Hamming distance problem, is often referred to as the "drosophila of evolutionary computation (EC)", because of its high relevance in theoretical and empirical analyses of EC approaches. It is…