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Traditional causal discovery methods often depend on strong, untestable assumptions, making them unreliable in real-world applications. In this context, Large Language Models (LLMs) have emerged as a promising alternative for extracting…

Artificial Intelligence · Computer Science 2026-03-31 Federico Baldo , Simon Ferreira , Charles K. Assaad

Estimating a directed acyclic graph (DAG) from observational data represents a canonical learning problem and has generated a lot of interest in recent years. Research has focused mostly on the following two cases: when no information…

Applications · Statistics 2019-02-15 Syed Rahman , Kshitij Khare , George Michailidis , Carlos Martinez , Juan Carulla

We consider the problem of learning causal directed acyclic graphs from an observational joint distribution. One can use these graphs to predict the outcome of interventional experiments, from which data are often not available. We show…

Machine Learning · Statistics 2016-08-18 Jonas Peters , Joris Mooij , Dominik Janzing , Bernhard Schölkopf

We address the problem of learning the topology of directed acyclic graphs (DAGs) from nodal observations, which adhere to a linear structural equation model. Recent advances framed the combinatorial DAG structure learning task as a…

Machine Learning · Computer Science 2024-09-13 Samuel Rey , Seyed Saman Saboksayr , Gonzalo Mateos

This paper addresses a gap in the current state of the art by providing a solution for modeling causal relationships that evolve over time and occur at different time scales. Specifically, we introduce the multiscale non-stationary directed…

Machine Learning · Computer Science 2023-11-21 Gabriele D'Acunto , Gianmarco De Francisci Morales , Paolo Bajardi , Francesco Bonchi

Directed acyclic graphs (DAGs) are a class of graphs commonly used in practice, with examples that include electronic circuits, Bayesian networks, and neural architectures. While many effective encoders exist for DAGs, it remains…

Machine Learning · Computer Science 2025-05-30 Michael Sun , Orion Foo , Gang Liu , Wojciech Matusik , Jie Chen

It is known that from purely observational data, a causal DAG is identifiable only up to its Markov equivalence class, and for many ground truth DAGs, the direction of a large portion of the edges will be remained unidentified. The golden…

Machine Learning · Computer Science 2019-10-15 AmirEmad Ghassami , Saber Salehkaleybar , Negar Kiyavash

Spatiotemporal prediction over graphs (STPG) is crucial for transportation systems. In existing STPG models, an adjacency matrix is an important component that captures the relations among nodes over graphs. However, most studies calculate…

Machine Learning · Computer Science 2024-11-26 Zhaobin Mo , Qingyuan Liu , Baohua Yan , Longxiang Zhang , Xuan Di

In practice, it is quite common to face combinatorial optimization problems which contain uncertainty along with non-determinism and dynamicity. These three properties call for appropriate algorithms; reinforcement learning (RL) is dealing…

Artificial Intelligence · Computer Science 2020-11-10 Nathan Grinsztajn , Olivier Beaumont , Emmanuel Jeannot , Philippe Preux

Coflow is a recently proposed networking abstraction to help improve the communication performance of data-parallel computing jobs. In multi-stage jobs, each job consists of multiple coflows and is represented by a Directed Acyclic Graph…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-22 Xin Wang , Hong Shen

We consider the problem of learning a set of direct causes of a target variable from an observational joint distribution. Learning directed acyclic graphs (DAGs) that represent the causal structure is a fundamental problem in science.…

Methodology · Statistics 2025-06-24 Juraj Bodik , Valérie Chavez-Demoulin

In many domains of empirical sciences, discovering the causal structure within variables remains an indispensable task. Recently, to tackle with unoriented edges or latent assumptions violation suffered by conventional methods, researchers…

Machine Learning · Computer Science 2024-12-30 Shixuan Liu , Yanghe Feng , Keyu Wu , Guangquan Cheng , Jincai Huang , Zhong Liu

Knowledge graphs and structural causal models have each proven valuable for organizing biomedical knowledge and estimating causal effects, but remain largely disconnected: knowledge graphs encode qualitative relationships focusing on facts…

Artificial Intelligence · Computer Science 2025-05-13 Sumyyah Toonsi , Paul Schofield , Robert Hoehndorf

In complex multivariate systems, interactions among variables are defined by dependency structures, often encoded as directed acyclic graphs ($\text{DAGs}$). However, dependency structures can vary across subjects, and ignoring this…

Machine Learning · Statistics 2026-05-20 Honglin Du , Muxuan Liang , Xiang Zhong

Causal discovery is the challenging task of inferring causal structure from data. Motivated by Pearl's Causal Hierarchy (PCH), which tells us that passive observations alone are not enough to distinguish correlation from causation, there…

Machine Learning · Computer Science 2024-01-31 Andreas W. M. Sauter , Nicolò Botteghi , Erman Acar , Aske Plaat

Advancements in technologies related to working with omics data require novel computation methods to fully leverage information and help develop a better understanding of human diseases. This paper studies the effects of introducing graph…

Genomics · Quantitative Biology 2023-10-17 Nishant Rajadhyaksha , Aarushi Chitkara

A longstanding goal in computational educational research is to develop explainable knowledge tracing (KT) models. Deep Knowledge Tracing (DKT), which leverages a Recurrent Neural Network (RNN) to predict student knowledge and performance…

Artificial Intelligence · Computer Science 2025-11-07 Kevin Hong , Kia Karbasi , Gregory Pottie

The prevailing graph neural network models have achieved significant progress in graph representation learning. However, in this paper, we uncover an ever-overlooked phenomenon: the pre-trained graph representation learning model tested…

Machine Learning · Computer Science 2023-02-14 Hang Gao , Jiangmeng Li , Wenwen Qiang , Lingyu Si , Bing Xu , Changwen Zheng , Fuchun Sun

We consider the problem of learning causal information between random variables in directed acyclic graphs (DAGs) when allowing arbitrarily many latent and selection variables. The FCI (Fast Causal Inference) algorithm has been explicitly…

Methodology · Statistics 2012-05-30 Diego Colombo , Marloes H. Maathuis , Markus Kalisch , Thomas S. Richardson

We propose a joint order-based scoring framework for causal structure learning of directed acyclic graph (DAG) models under heterogeneous data settings. We show that leveraging heterogeneity improves the accuracy of causal ordering…

Methodology · Statistics 2026-05-18 Hyunwoong Chang , Fariha Taskin