Related papers: A Large-Scale Dataset for Biomedical Keyphrase Gen…
Generating clinical synthetic text represents an effective solution for common clinical NLP issues like sparsity and privacy. This paper aims to conduct a systematic review on generating synthetic medical free-text by formulating…
Recently, the sequence-to-sequence models have made remarkable progress on the task of keyphrase generation (KG) by concatenating multiple keyphrases in a predefined order as a target sequence during training. However, the keyphrases are…
Keyphrase provides accurate information of document content that is highly compact, concise, full of meanings, and widely used for discourse comprehension, organization, and text retrieval. Though previous studies have made substantial…
Writing clinical notes and documenting medical exams is a critical task for healthcare professionals, serving as a vital component of patient care documentation. However, manually writing these notes is time-consuming and can impact the…
Biomedical research papers use significantly different language and jargon when compared to typical English text, which reduces the utility of pre-trained NLP models in this domain. Meanwhile Medline, a database of biomedical abstracts,…
Large Language Models (LLMs) have made remarkable advancements in the field of natural language processing. However, their increasing size poses challenges in terms of computational cost. On the other hand, Small Language Models (SLMs) are…
Current publicly available knowledge work data collections lack diversity, extensive annotations, and contextual information about the users and their documents. These issues hinder objective and comparable data-driven evaluations and…
Paraphrase generation has been widely used in various downstream tasks. Most tasks benefit mainly from high quality paraphrases, namely those that are semantically similar to, yet linguistically diverse from, the original sentence.…
Keyphrases provide semantic metadata that summarize and characterize documents. This paper describes Kea, an algorithm for automatically extracting keyphrases from text. Kea identifies candidate keyphrases using lexical methods, calculates…
Many academic journals ask their authors to provide a list of about five to fifteen keywords, to appear on the first page of each article. Since these key words are often phrases of two or more words, we prefer to call them keyphrases.…
Automatic survey generation has emerged as a key task in scientific document processing. While large language models (LLMs) have shown promise in generating survey texts, the lack of standardized evaluation datasets critically hampers…
Data-to-text (D2T) generation in the biomedical domain is a promising - yet mostly unexplored - field of research. Here, we apply neural models for D2T generation to a real-world dataset consisting of package leaflets of European medicines.…
We introduce BIOMRC, a large-scale cloze-style biomedical MRC dataset. Care was taken to reduce noise, compared to the previous BIOREAD dataset of Pappas et al. (2018). Experiments show that simple heuristics do not perform well on the new…
One of the limitations of semantic parsing approaches to open-domain question answering is the lexicosyntactic gap between natural language questions and knowledge base entries -- there are many ways to ask a question, all with the same…
Obtaining text datasets with semantic annotations is an effortful process, yet crucial for supervised training in natural language processsing (NLP). In general, developing and applying new NLP pipelines in domain-specific contexts for…
Terpenoids are a crucial class of natural products that have been studied for over 150 years, but their interdisciplinary nature (spanning chemistry, pharmacology, and biology) complicates knowledge integration. To address this, the authors…
Clinical notes containing valuable patient information are written by different health care providers with various scientific levels and writing styles. It might be helpful for clinicians and researchers to understand what information is…
PubMed is an essential resource for the medical domain, but useful concepts are either difficult to extract or are ambiguated, which has significantly hindered knowledge discovery. To address this issue, we constructed a PubMed knowledge…
Acquiring training data to improve the robustness of dialog systems can be a painstakingly long process. In this work, we propose a method to reduce the cost and effort of creating new conversational agents by artificially generating more…
Models such as GPT-4 and Med-PaLM 2 have demonstrated impressive performance on a wide variety of biomedical NLP tasks. However, these models have hundreds of billions of parameters, are computationally expensive to run, require users to…