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Related papers: Catalysis from the bottom-up

200 papers

What are the fundamental limits and advantages of using a catalyst to aid thermodynamic transformations between quantum systems? In this work, we answer this question by focusing on transformations between energy-incoherent states under the…

Quantum Physics · Physics 2024-08-28 Jakub Czartowski , A. de Oliveira Junior

We introduce an autocatalytic aggregation model in which the rate at which two clusters merge to form a cluster is controlled by the presence of a third "catalytic" cluster whose mass must equal to the mass of one of the reaction partners.…

Statistical Mechanics · Physics 2025-01-14 P. L. Krapivsky , S. Redner

We define catalytic networks as chemical reaction networks with an essentially catalytic reaction pathway: one which is on in the presence of certain catalysts and off in their absence. We show that examples of catalytic networks include…

Molecular Networks · Quantitative Biology 2011-11-18 Manoj Gopalkrishnan

A system formed by a crowded environment of catalytic obstacles and complex oscillatory chemical reactions is inquired. The obstacles are static spheres of equal radius, which are placed in a random way. The chemical reactions are carried…

Chemical Physics · Physics 2018-12-05 Carlos Echeverria , José L. Herrera , Kay Tucci , Orlando Alvarez-Llamoza , Miguel Morales

It is known that secondary non-stoquastic drivers may offer speed-ups or catalysis in some models of adiabatic quantum computation accompanying the more typical transverse field driver. Their combined intent is to raze potential barriers to…

Quantum Physics · Physics 2019-04-02 Gabriel A. Durkin

The laws of thermodynamics are usually formulated under the assumption of infinitely large environments. While this idealization facilitates theoretical treatments, real physical systems are always finite and their interaction range is…

Quantum Physics · Physics 2021-09-22 Ivan Henao , Raam Uzdin

Scientists perform diverse manual procedures that are tedious and laborious. Such procedures are considered a bottleneck for modern experimental science, as they consume time and increase burdens in fields including material science and…

Engineering molecular systems that exhibit complex behavior requires the design of kinetic barriers. For example, an effective catalytic pathway must have a large barrier when the catalyst is absent. While programming such energy barriers…

Emerging Technologies · Computer Science 2020-01-28 Keenan Breik , Cameron Chalk , David Doty , David Haley , David Soloveichik

Life is commonly described as a self-organized, far-from-equilibrium process that maintains internal order by consuming free energy and exporting entropy. This thermodynamic view underlies diverse theoretical frameworks -- from autopoiesis…

Biological Physics · Physics 2025-12-23 Didier Sornette , Virgile Troude

We study the ability to maintain information in a population of reacting polymers under the influence of decay, i.e., spontaneous breakdown of large polymers. At a certain decay rate, it becomes impossible to maintain a significant…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Wim Hordijk , Jose F. Fontanari

Many biological molecular motors and machines are driven by chemical reactions that occur in specific catalytic sites. We study whether the arrival of molecules to such an active site can be accelerated by the presence of a nearby inactive…

Statistical Mechanics · Physics 2025-01-06 Hila Katznelson , Saar Rahav

A universal feature of the biochemistry of any living system is that all the molecules and catalysts that are required for reactions of the system can be built up from an available food source by repeated application of reactions from…

Molecular Networks · Quantitative Biology 2013-07-11 Wim Hordijk , Peter R. Wills , Mike Steel

Autonomous computations that rely on automated reaction network elucidation algorithms may pave the way to make computational catalysis on a par with experimental research in the field. Several advantages of this approach are key to…

Materials Science · Physics 2022-03-18 Miguel Steiner , Markus Reiher

A catalyst is a substance that enables otherwise impossible transformations between states of a system, without being consumed in the process. In this work, we apply the notion of catalysts to many-body quantum physics. In particular, we…

Quantum Physics · Physics 2025-06-19 David T. Stephen , Rahul Nandkishore , Jian-Hao Zhang

The sustainable production of many bulk chemicals relies on heterogeneous catalysis. The rational design or improvement of the required catalysts critically depends on insights into the underlying mechanisms at the atomic scale. In recent…

Chemical Physics · Physics 2024-11-04 Amir Omranpour , Jan Elsner , K. Nikolas Lausch , Jörg Behler

Catalysis-driven synthetic molecular motors operate in a loose mechanochemical coupling regime, one in which a decomposition of a fuel molecule does not reliably produce a forward step. In that regime, stochastic backward steps can…

Statistical Mechanics · Physics 2026-01-16 Geyao Gu , Drew Alvarez , John Strahan , Alex Albaugh , Emanuele Penocchio , Todd R. Gingrich

Enzyme catalysis in reactors for industrial applications usually require an external intervention of the species involved in the chemical reactions. We analyze the most elementary open enzyme catalysis with competitive inhibition where a…

Dynamical Systems · Mathematics 2024-06-11 Homero G. Díaz-Marín , José L. Sánchez-Ponce

Entanglement is a key quantum resource in various quantum protocols, with a rich set of laws governing its manipulation. In this context, catalysis refers to the possibility of an auxiliary state that enables a previously forbidden…

Quantum Physics · Physics 2026-05-07 Ray Ganardi

We develop a theory of enzyme catalysis within biological cells where the substrate concentration [S](t) is time dependent, in contrast to the Michaelis-Menten theory that assumes a steady state. We find that the time varying concentration…

Statistical Mechanics · Physics 2011-05-27 Biman Jana , Biman Bagchi

The use of nanoplasmonics to control light and heat close to the thermodynamic limit enables exciting opportunities in the field of plasmonic catalysis. The decay of plasmonic excitations creates highly nonequilibrium distributions of hot…