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Recent advances in language models have enabled framing molecule generation as sequence modeling. However, existing approaches often rely on single-objective reinforcement learning, limiting their applicability to real-world drug design,…

Machine Learning · Computer Science 2025-02-11 Diego Calanzone , Pierluca D'Oro , Pierre-Luc Bacon

Transferring a deep neural network trained on one problem to another requires only a small amount of data and little additional computation time. The same behaviour holds for ensembles of deep learning models typically superior to a single…

Machine Learning · Computer Science 2022-06-28 Ilya Shashkov , Nikita Balabin , Evgeny Burnaev , Alexey Zaytsev

Quantum Computing (QC) offers outstanding potential for molecular characterization and drug discovery, particularly in solving complex properties like the Ground State Energy (GSE) of biomolecules. However, QC faces challenges due to…

Chemical Physics · Physics 2024-12-17 Laia Coronas Sala , Parfait Atchade-Adelemou

Graph neural networks are currently leading the performance charts in learning-based molecule property prediction and classification. Computational chemistry has, therefore, become the a prominent testbed for generic graph neural networks,…

Machine Learning · Computer Science 2020-02-04 Eliya Nachmani , Lior Wolf

The growing luminosity frontier at the Large Hadron Collider is challenging the reconstruction and analysis of particle collision events. Increased particle multiplicities are straining latency and storage requirements at the data…

Data Analysis, Statistics and Probability · Physics 2026-03-09 William Sutcliffe , Marta Calvi , Simone Capelli , Jonas Eschle , Julián García Pardiñas , Abhijit Mathad , Azusa Uzuki , Nicola Serra

Inexpensive machine learning potentials are increasingly being used to speed up structural optimization and molecular dynamics simulations of materials by iteratively predicting and applying interatomic forces. In these settings, it is…

Chemical Physics · Physics 2023-09-12 Jonas Busk , Mikkel N. Schmidt , Ole Winther , Tejs Vegge , Peter Bjørn Jørgensen

Learning to generate neural network parameters conditioned on task descriptions and architecture specifications is pivotal for advancing model adaptability and transfer learning. Existing methods especially those based on diffusion models…

Machine Learning · Computer Science 2025-04-04 Soro Bedionita , Bruno Andreis , Song Chong , Sung Ju Hwang

Ensemble of machine learning models yields improved performance as well as robustness. However, their memory requirements and inference costs can be prohibitively high. Knowledge distillation is an approach that allows a single model to…

Computer Vision and Pattern Recognition · Computer Science 2022-10-06 Zhengcong Fei , Shuman Tian , Junshi Huang , Xiaoming Wei , Xiaolin Wei

Microstructural heterogeneity affects the macro-scale behavior of materials. Conversely, load distribution at the macro-scale changes the microstructural response. These up-scaling and down-scaling relations are often modeled using…

Materials Science · Physics 2023-06-13 Ashwini Gupta , Anindya Bhaduri , Lori Graham-Brady

A computationally efficient protocol for machine learning in chemical space using Boltzmann ensembles of conformers as input is proposed; the method is based on rewriting Kernel Ridge Regression expressions in terms of Structured Orthogonal…

Chemical Physics · Physics 2025-07-11 Konstantin Karandashev

Model ensemble is an effective strategy in continual learning, which alleviates catastrophic forgetting by interpolating model parameters, achieving knowledge fusion learned from different tasks. However, existing model ensemble methods…

Computer Vision and Pattern Recognition · Computer Science 2025-09-25 Yuchuan Mao , Zhi Gao , Xiaomeng Fan , Yuwei Wu , Yunde Jia , Chenchen Jing

Supervised learning on molecules has incredible potential to be useful in chemistry, drug discovery, and materials science. Luckily, several promising and closely related neural network models invariant to molecular symmetries have already…

Machine Learning · Computer Science 2017-06-14 Justin Gilmer , Samuel S. Schoenholz , Patrick F. Riley , Oriol Vinyals , George E. Dahl

How to reduce compute and memory requirements of neural networks (NNs) without sacrificing performance? Many recent works use sparse Mixtures of Experts (MoEs) to build resource-efficient large language models (LMs). Here we introduce…

Machine Learning · Computer Science 2023-11-22 Róbert Csordás , Kazuki Irie , Jürgen Schmidhuber

Multi-modal models excel in cross-modal tasks but are computationally expensive due to their billions of parameters. Parameter-efficient fine-tuning (PEFT) offers a solution by adding small trainable components while freezing pre-trained…

Machine Learning · Computer Science 2025-03-27 Sashuai Zhou , Hai Huang , Yan Xia

Learning effective protein representations is critical in a variety of tasks in biology such as predicting protein functions. Recent sequence representation learning methods based on Protein Language Models (PLMs) excel in sequence-based…

Quantitative Methods · Quantitative Biology 2023-10-19 Zuobai Zhang , Chuanrui Wang , Minghao Xu , Vijil Chenthamarakshan , Aurélie Lozano , Payel Das , Jian Tang

Envelope model also known as multivariate regression model was proposed to solve the multiple response regression problems. It measures the linear association between predictors and multiple responses by using the minimal reducing subspace…

Methodology · Statistics 2018-05-07 Bochao Jia

The length and time scales of atomistic simulations are limited by the computational cost of the methods used to predict material properties. In recent years there has been great progress in the use of machine learning algorithms to develop…

Computational Physics · Physics 2022-11-03 Alberto Hernandez , Adarsh Balasubramanian , Fenglin Yuan , Simon Mason , Tim Mueller

Deep learning models are widely used across computer vision and other domains. When working on the model induction, selecting the right architecture for a given dataset often relies on repetitive trial-and-error procedures. This procedure…

Machine Learning · Computer Science 2026-01-06 Yen-Chia Chen , Hsing-Kuo Pao , Hanjuan Huang

Passive Gamma Emission Tomography (PGET) is an IAEA-approved technique for verifying spent nuclear fuel assemblies prior to geological disposal. Reconstructing the emission and attenuation maps from PGET measurements is a nonlinear…

Numerical Analysis · Mathematics 2026-04-30 Tommi Heikkilä , Sara Heikkinen , Riina Rimppi , Tapio Helin

Large Language Models (LLMs) based on Mixture-of-Experts (MoE) are pivotal in industrial applications for their ability to scale performance efficiently. However, standard MoEs enforce uniform expert sizes,creating a rigidity that fails to…

Computation and Language · Computer Science 2026-04-29 Zhicheng Ma , Xiang Liu , Zhaoxiang Liu , Ning Wang , Yi Shen , Kai Wang , Shuming Shi , Shiguo Lian