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The use of generative models to sample equilibrium distributions of many-body systems, as first demonstrated by Boltzmann Generators, has attracted substantial interest due to their ability to produce unbiased and uncorrelated samples in…

Statistical Mechanics · Physics 2025-10-23 Maximilian Schebek , Frank Noé , Jutta Rogal

Computing equilibrium states in condensed-matter many-body systems, such as solvated proteins, is a long-standing challenge. Lacking methods for generating statistically independent equilibrium samples in "one shot", vast computational…

Machine Learning · Statistics 2019-07-15 Frank Noé , Simon Olsson , Jonas Köhler , Hao Wu

In this study, we address the challenge of using energy-based models to produce high-quality, label-specific data in complex structured datasets, such as population genetics, RNA or protein sequences data. Traditional training methods…

Machine Learning · Computer Science 2025-02-07 Alessandra Carbone , Aurélien Decelle , Lorenzo Rosset , Beatriz Seoane

The restricted Boltzmann machine is a basic machine learning tool able, in principle, to model the distribution of some arbitrary dataset. Its standard training procedure appears however delicate and obscure in many respects. We bring some…

Disordered Systems and Neural Networks · Physics 2021-11-18 Aurélien Decelle , Cyril Furtlehner

Sampling equilibrium molecular configurations from the Boltzmann distribution is a longstanding challenge. Boltzmann Generators (BGs) address this by combining exact-likelihood generative models with importance sampling, but practical…

Machine Learning · Computer Science 2026-05-29 Weilong Chen , Bojun Zhao , Jan Eckwert , Julija Zavadlav

Generative models based on invertible transformations provide a physics-aware route to sample equilibrium configurations directly from the Boltzmann distribution, enabling efficient exploration of complex thermodynamic landscapes. Here, we…

Statistical Mechanics · Physics 2026-03-06 Luigi de Santis , John Russo , Andrea Ninarello

The generation of equilibrium samples of molecular systems has been a long-standing problem in statistical physics. Boltzmann Generators are a generative machine learning method that addresses this issue by learning a transformation via a…

Machine Learning · Statistics 2025-02-04 Leon Klein , Frank Noé

Restricted Boltzmann Machines (RBMs) are typically trained using finite-length Gibbs chains under a fixed sampling temperature. This practice implicitly assumes that the stochastic regime remains valid as the energy landscape evolves during…

Machine Learning · Computer Science 2026-03-04 Görkem Can Süleymanoğlu

Efficient sampling from the Boltzmann distribution given its energy function is a key challenge for modeling complex physical systems such as molecules. Boltzmann Generators address this problem by leveraging continuous normalizing flows to…

Machine Learning · Computer Science 2025-10-17 Rishal Aggarwal , Jacky Chen , Nicholas M. Boffi , David Ryan Koes

We present a theoretical analysis of Gaussian-binary restricted Boltzmann machines (GRBMs) from the perspective of density models. The key aspect of this analysis is to show that GRBMs can be formulated as a constrained mixture of…

Neural and Evolutionary Computing · Computer Science 2017-02-06 Nan Wang , Jan Melchior , Laurenz Wiskott

We consider restricted Boltzmann machines with a binary visible layer and a Gaussian hidden layer trained by an unlabelled dataset composed of noisy realizations of a single ground pattern. We develop a statistical mechanics framework to…

Disordered Systems and Neural Networks · Physics 2024-06-17 Alberto Fachechi , Elena Agliari , Miriam Aquaro , Anthony Coolen , Menno Mulder

Extracting automatically the complex set of features composing real high-dimensional data is crucial for achieving high performance in machine--learning tasks. Restricted Boltzmann Machines (RBM) are empirically known to be efficient for…

Data Analysis, Statistics and Probability · Physics 2017-04-05 Jérôme Tubiana , Rémi Monasson

Generative neural networks can produce data samples according to the statistical properties of their training distribution. This feature can be used to test modern computational neuroscience hypotheses suggesting that spontaneous brain…

Neural and Evolutionary Computing · Computer Science 2025-07-29 Lorenzo Tausani , Alberto Testolin , Marco Zorzi

We investigate the performance of machine learning algorithms trained exclusively with configurations obtained from importance sampling Monte Carlo simulations of the two-dimensional Ising model with conserved magnetization. For supervised…

Statistical Mechanics · Physics 2021-03-19 Ahmadreza Azizi , Michel Pleimling

We present a diffusion-based, generative model for conformer generation. Our model is focused on the reproduction of bonded structure and is constructed from the associated terms traditionally found in classical force fields to ensure a…

Biomolecules · Quantitative Biology 2024-03-18 David C. Williams , Neil Inala

Restricted Boltzmann machines (RBMs) are a powerful class of generative models, but their training requires computing a gradient that, unlike supervised backpropagation on typical loss functions, is notoriously difficult even to…

Machine Learning · Computer Science 2020-11-03 Haik Manukian , Yan Ru Pei , Sean R. B. Bearden , Massimiliano Di Ventra

Conditional Restricted Boltzmann Machines (CRBMs) are rich probabilistic models that have recently been applied to a wide range of problems, including collaborative filtering, classification, and modeling motion capture data. While much…

Machine Learning · Computer Science 2012-02-20 Volodymyr Mnih , Hugo Larochelle , Geoffrey E. Hinton

We propose ratio divergence (RD) learning for discrete energy-based models, a method that utilizes both training data and a tractable target energy function. We apply RD learning to restricted Boltzmann machines (RBMs), which are a minimal…

Machine Learning · Statistics 2025-10-09 Yuichi Ishida , Yuma Ichikawa , Aki Dote , Toshiyuki Miyazawa , Koji Hukushima

Generative models offer a direct way of modeling complex data. Energy-based models attempt to encode the statistical correlations observed in the data at the level of the Boltzmann weight associated with an energy function in the form of a…

Disordered Systems and Neural Networks · Physics 2024-04-10 Aurélien Decelle , Cyril Furtlehner , Alfonso De Jesus Navas Gómez , Beatriz Seoane

Restricted Boltzmann Machines (RBMs) are general unsupervised learning devices to ascertain generative models of data distributions. RBMs are often trained using the Contrastive Divergence learning algorithm (CD), an approximation to the…

Machine Learning · Computer Science 2014-04-10 David Buchaca , Enrique Romero , Ferran Mazzanti , Jordi Delgado
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