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Graph embedding has been widely applied in areas such as network analysis, social network mining, recommendation systems, and bioinformatics. However, current graph construction methods often require the prior definition of neighborhood…

Machine Learning · Computer Science 2025-10-08 S. Peng , L. Hu , W. Zhang , B. Jie , Y. Luo

Network embedding has been intensively studied in the literature and widely used in various applications, such as link prediction and node classification. While previous work focus on the design of new algorithms or are tailored for various…

Social and Information Networks · Computer Science 2019-11-12 Wenqing Lin , Feng He , Faqiang Zhang , Xu Cheng , Hongyun Cai

Knowledge graph embedding methods learn embeddings of entities and relations in a low dimensional space which can be used for various downstream machine learning tasks such as link prediction and entity matching. Various graph convolutional…

Machine Learning · Computer Science 2021-02-16 Nasrullah Sheikh , Xiao Qin , Berthold Reinwald , Christoph Miksovic , Thomas Gschwind , Paolo Scotton

Graph neural networks (GNNs) are widely applied in graph data modeling. However, existing GNNs are often trained in a task-driven manner that fails to fully capture the intrinsic nature of the graph structure, resulting in sub-optimal node…

Machine Learning · Computer Science 2024-07-17 Zhenhua Huang , Kunhao Li , Shaojie Wang , Zhaohong Jia , Wentao Zhu , Sharad Mehrotra

Numerous Graph Neural Networks (GNNs) have been developed to tackle the challenge of Knowledge Graph Embedding (KGE). However, many of these approaches overlook the crucial role of relation information and inadequately integrate it with…

Machine Learning · Computer Science 2024-09-24 Peyman Baghershahi , Reshad Hosseini , Hadi Moradi

Attributed graph clustering is challenging as it requires joint modelling of graph structures and node attributes. Recent progress on graph convolutional networks has proved that graph convolution is effective in combining structural and…

Machine Learning · Computer Science 2019-06-05 Xiaotong Zhang , Han Liu , Qimai Li , Xiao-Ming Wu

Representation learning for graphs enables the application of standard machine learning algorithms and data analysis tools to graph data. Replacing discrete unordered objects such as graph nodes by real-valued vectors is at the heart of…

Machine Learning · Computer Science 2021-02-10 Konstantin Kutzkov

Graph neural network training is mainly categorized into mini-batch and full-batch training methods. The mini-batch training method samples subgraphs from the original graph in each iteration. This sampling operation introduces extra…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-02 Shuai Zhang , Zite Jiang , Haihang You

This work presents a two-stage neural architecture for learning and refining structural correspondences between graphs. First, we use localized node embeddings computed by a graph neural network to obtain an initial ranking of soft…

Machine Learning · Computer Science 2020-01-28 Matthias Fey , Jan E. Lenssen , Christopher Morris , Jonathan Masci , Nils M. Kriege

Graph embeddings have become a key and widely used technique within the field of graph mining, proving to be successful across a broad range of domains including social, citation, transportation and biological. Graph embedding techniques…

Machine Learning · Computer Science 2018-06-21 Stephen Bonner , Ibad Kureshi , John Brennan , Georgios Theodoropoulos , Andrew Stephen McGough , Boguslaw Obara

Graph kernels are widely used for measuring the similarity between graphs. Many existing graph kernels, which focus on local patterns within graphs rather than their global properties, suffer from significant structure information loss when…

Machine Learning · Computer Science 2019-12-02 Lingfei Wu , Ian En-Hsu Yen , Zhen Zhang , Kun Xu , Liang Zhao , Xi Peng , Yinglong Xia , Charu Aggarwal

Graph Neural Networks (GNNs) have been generalized to process the heterogeneous graphs by various approaches. Unfortunately, these approaches usually model the heterogeneity via various complicated modules. This paper aims to propose a…

Machine Learning · Computer Science 2023-11-23 Junfu Wang , Yuanfang Guo , Liang Yang , Yunhong Wang

Graph similarity search is among the most important graph-based applications, e.g. finding the chemical compounds that are most similar to a query compound. Graph similarity computation, such as Graph Edit Distance (GED) and Maximum Common…

Machine Learning · Computer Science 2020-03-03 Yunsheng Bai , Hao Ding , Song Bian , Ting Chen , Yizhou Sun , Wei Wang

Attributed graph clustering holds significant importance in modern data analysis. However, due to the complexity of graph data and the heterogeneity of node attributes, leveraging graph information for clustering remains challenging. To…

Machine Learning · Computer Science 2025-08-01 Binxiong Li , Xu Xiang , Xue Li , Quanzhou Lou , Binyu Zhao , Yujie Liu , Huijie Tang , Benhan Yang

We propose an extension to the transformer neural network architecture for general-purpose graph learning by adding a dedicated pathway for pairwise structural information, called edge channels. The resultant framework - which we call…

Machine Learning · Computer Science 2022-06-06 Md Shamim Hussain , Mohammed J. Zaki , Dharmashankar Subramanian

This paper introduces a refined graph encoder embedding method, enhancing the original graph encoder embedding through linear transformation, self-training, and hidden community recovery within observed communities. We provide the…

Social and Information Networks · Computer Science 2025-03-18 Cencheng Shen , Jonathan Larson , Ha Trinh , Carey E. Priebe

Contrastive learning has recently attracted plenty of attention in deep graph clustering for its promising performance. However, complicated data augmentations and time-consuming graph convolutional operation undermine the efficiency of…

Machine Learning · Computer Science 2022-06-28 Yue Liu , Xihong Yang , Sihang Zhou , Xinwang Liu

Graph embedding is a transformation of nodes of a graph into a set of vectors. A~good embedding should capture the graph topology, node-to-node relationship, and other relevant information about the graph, its subgraphs, and nodes. If these…

Social and Information Networks · Computer Science 2022-06-22 Arash Dehghan-Kooshkghazi , Bogumił Kamiński , Łukasz Kraiński , Paweł Prałat , François Théberge

With the increasing demands of training graph neural networks (GNNs) on large-scale graphs, graph data condensation has emerged as a critical technique to relieve the storage and time costs during the training phase. It aims to condense the…

Machine Learning · Computer Science 2024-06-10 Zhanyu Liu , Chaolv Zeng , Guanjie Zheng

Most existing knowledge graphs suffer from incompleteness. Embedding knowledge graphs into continuous vector spaces has recently attracted increasing interest in knowledge base completion. However, in most existing embedding methods, only…

Information Retrieval · Computer Science 2020-11-18 Zhenghao Zhang , Jianbin Huang , Qinglin Tan