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In primates, loci associated with adaptive trait variation often fall in non-coding regions. Understanding the mechanisms linking these regulatory variants to fitness-relevant phenotypes remains challenging, but can be addressed using…

Genomics · Quantitative Biology 2025-04-04 Genevieve Housman , Audrey Arner , Amy Longtin , Christian Gagnon , Arun Durvasula , Amanda Lea

Neural codecs, comprising an encoder, quantizer, and decoder, enable signal transmission at exceptionally low bitrates. Training these systems requires techniques like the straight-through estimator, soft-to-hard annealing, or statistical…

Audio and Speech Processing · Electrical Eng. & Systems 2025-02-10 Wolfgang Mack , Ahmed Mustafa , Rafał Łaganowski , Samer Hijazy

In this study we present a kernel based convolution model to characterize neural responses to natural sounds by decoding their time-varying acoustic features. The model allows to decode natural sounds from high-dimensional neural…

Machine Learning · Statistics 2016-11-15 Ali Faisal , Anni Nora , Jaeho Seol , Hanna Renvall , Riitta Salmelin

In the near future, more and more machines will perform tasks in the vicinity of human spaces or support them directly in their spatially bound activities. In order to simplify the verbal communication and the interaction between robotic…

Machine Learning · Computer Science 2020-04-14 Sebastian Feld , Steffen Illium , Andreas Sedlmeier , Lenz Belzner

We conduct a large scale empirical investigation of contextualized number prediction in running text. Specifically, we consider two tasks: (1)masked number prediction-predicting a missing numerical value within a sentence, and (2)numerical…

Computation and Language · Computer Science 2020-11-17 Daniel Spokoyny , Taylor Berg-Kirkpatrick

The decoding of error syndromes of surface codes with classical algorithms may slow down quantum computation. To overcome this problem it is possible to implement decoding algorithms based on artificial neural networks. This work reports a…

Quantum Physics · Physics 2026-04-21 Simone Bordoni , Stefano Giagu

Amino-acid substitutions are implicated in a wide range of human diseases, many of which are lethal. Distinguishing such mutations from polymorphisms without significant effect on human health is a necessary step in understanding the…

Quantitative Methods · Quantitative Biology 2017-01-26 Christoph Feinauer , Martin Weigt

Neural recordings are nonstationary time series, i.e. their properties typically change over time. Identifying specific changes, e.g. those induced by a learning task, can shed light on the underlying neural processes. However, such changes…

Quantitative Methods · Quantitative Biology 2013-01-28 Duncan A. J. Blythe , Frank C. Meinecke , Paul von Buenau , Klaus-Robert Mueller

This paper studied generating natural languages at particular contexts or situations. We proposed two novel approaches which encode the contexts into a continuous semantic representation and then decode the semantic representation into text…

Computation and Language · Computer Science 2016-12-01 Jian Tang , Yifan Yang , Sam Carton , Ming Zhang , Qiaozhu Mei

We investigate the use of extended context in attention-based neural machine translation. We base our experiments on translated movie subtitles and discuss the effect of increasing the segments beyond single translation units. We study the…

Computation and Language · Computer Science 2017-08-22 Jörg Tiedemann , Yves Scherrer

Brain decoding is a field of computational neuroscience that uses measurable brain activity to infer mental states or internal representations of perceptual inputs. Therefore, we propose a novel approach to brain decoding that also relies…

Computer Vision and Pattern Recognition · Computer Science 2023-03-23 Matteo Ferrante , Tommaso Boccato , Nicola Toschi

Intracranial recordings have opened a unique opportunity to simultaneously measure activity across multiregional networks in the human brain. Recent works have focused on developing transformer-based neurofoundation models of such…

Machine Learning · Computer Science 2025-12-16 Lucine L. Oganesian , Saba Hashemi , Maryam M. Shanechi

Multimodal behavior involves multiple processing stations distributed across distant brain regions, but our understanding of how such distributed processing is coordinated in the brain is limited. Here we take a decoding approach to this…

Neurons and Cognition · Quantitative Biology 2019-01-25 Ohad Felsenstein , Idan Tal , Michal Ben-Shachar , Moshe Abeles , Gal Chechik

A robot's ability to understand or ground natural language instructions is fundamentally tied to its knowledge about the surrounding world. We present an approach to grounding natural language utterances in the context of factual…

Robotics · Computer Science 2018-11-19 Rohan Paul , Andrei Barbu , Sue Felshin , Boris Katz , Nicholas Roy

Often in language and other areas of cognition, whether two components of an object are identical or not determine whether it is well formed. We call such constraints identity effects. When developing a system to learn well-formedness from…

Computation and Language · Computer Science 2020-05-12 Simone Brugiapaglia , Matthew Liu , Paul Tupper

Humans and animals exhibit a range of interesting behaviors in dynamic environments, and it is unclear how our brains actively reformat this dense sensory information to enable these behaviors. Experimental neuroscience is undergoing a…

Neurons and Cognition · Quantitative Biology 2023-11-07 Aran Nayebi

Biological systems display impressive capabilities in effectively responding to environmental signals in real time. There is increasing evidence that organisms may indeed be employing near optimal Bayesian calculations in their…

Neurons and Cognition · Quantitative Biology 2010-02-12 Steve Yaeli , Ron Meir

Addressing the question of visualising human mind could help us to find regions that are associated with observed cognition and responsible for expressing the elusive mental image, leading to a better understanding of cognitive function.…

Neurons and Cognition · Quantitative Biology 2021-02-11 Pan Wang , Rui Zhou , Shuo Wang , Ling Li , Wenjia Bai , Jialu Fan , Chunlin Li , Peter Childs , Yike Guo

Contextual information plays a critical role in object recognition models within computer vision, where changes in context can significantly affect accuracy, underscoring models' dependence on contextual cues. This study investigates how…

Computer Vision and Pattern Recognition · Computer Science 2024-11-06 Sayanta Adhikari , Rishav Kumar , Konda Reddy Mopuri , Rajalakshmi Pachamuthu

When reading, we often have specific information that interests us in a text. For example, you might be reading this paper because you are curious about LLMs for eye movements in reading, the experimental design, or perhaps you wonder…

Computation and Language · Computer Science 2026-03-03 Cfir Avraham Hadar , Omer Shubi , Yoav Meiri , Amit Heshes , Yevgeni Berzak