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Medical coding is the task of assigning medical codes to clinical free-text documentation. Healthcare professionals manually assign such codes to track patient diagnoses and treatments. Automated medical coding can considerably alleviate…

Machine Learning · Computer Science 2023-04-24 Joakim Edin , Alexander Junge , Jakob D. Havtorn , Lasse Borgholt , Maria Maistro , Tuukka Ruotsalo , Lars Maaløe

Due to the lack of expertise for medical image annotation, the investigation of label-efficient methodology for medical image segmentation becomes a heated topic. Recent progresses focus on the efficient utilization of weak annotations…

Image and Video Processing · Electrical Eng. & Systems 2022-03-14 Junwen Pan , Qi Bi , Yanzhan Yang , Pengfei Zhu , Cheng Bian

Medical image segmentation plays an irreplaceable role in computer-assisted diagnosis, treatment planning, and following-up. Collecting and annotating a large-scale dataset is crucial to training a powerful segmentation model, but producing…

Image and Video Processing · Electrical Eng. & Systems 2022-03-07 Xiangde Luo , Minhao Hu , Wenjun Liao , Shuwei Zhai , Tao Song , Guotai Wang , Shaoting Zhang

Accurately predicting and detecting interstitial lung disease (ILD) patterns given any computed tomography (CT) slice without any pre-processing prerequisites, such as manually delineated regions of interest (ROIs), is a clinically…

Computer Vision and Pattern Recognition · Computer Science 2017-01-23 Mingchen Gao , Ziyue Xu , Le Lu , Adam P. Harrison , Ronald M. Summers , Daniel J. Mollura

Medical coding is essential for standardizing clinical data and communication but is often time-consuming and prone to errors. Traditional Natural Language Processing (NLP) methods struggle with automating coding due to the large label…

Monocular depth estimation and semantic segmentation are two fundamental goals of scene understanding. Due to the advantages of task interaction, many works study the joint task learning algorithm. However, most existing methods fail to…

Computer Vision and Pattern Recognition · Computer Science 2021-09-02 Tianxiao Gao , Wu Wei , Zhongbin Cai , Zhun Fan , Shane Xie , Xinmei Wang , Qiuda Yu

3D medical image segmentation is a challenging task with crucial implications for disease diagnosis and treatment planning. Recent advances in deep learning have significantly enhanced fully supervised medical image segmentation. However,…

Image and Video Processing · Electrical Eng. & Systems 2025-06-23 Runmin Jiang , Zhaoxin Fan , Junhao Wu , Lenghan Zhu , Xin Huang , Tianyang Wang , Heng Huang , Min Xu

Linking clinical narratives to standardized vocabularies and coding systems is a key component of unlocking the information in medical text for analysis. However, many domains of medical concepts lack well-developed terminologies that can…

Computation and Language · Computer Science 2021-03-11 Denis Newman-Griffis , Eric Fosler-Lussier

Automatic medical image segmentation plays a critical role in scientific research and medical care. Existing high-performance deep learning methods typically rely on large training datasets with high-quality manual annotations, which are…

Image and Video Processing · Electrical Eng. & Systems 2021-11-17 Shanshan Wang , Cheng Li , Rongpin Wang , Zaiyi Liu , Meiyun Wang , Hongna Tan , Yaping Wu , Xinfeng Liu , Hui Sun , Rui Yang , Xin Liu , Jie Chen , Huihui Zhou , Ismail Ben Ayed , Hairong Zheng

Hierarchical multi-label text classification (HMTC) has been gaining popularity in recent years thanks to its applicability to a plethora of real-world applications. The existing HMTC algorithms largely focus on the design of classifiers,…

Computation and Language · Computer Science 2021-04-13 Xinyi Zhang , Jiahao Xu , Charlie Soh , Lihui Chen

Addressing the complexity of accurately classifying International Classification of Diseases (ICD) codes from medical discharge summaries is challenging due to the intricate nature of medical documentation. This paper explores the use of…

Machine Learning · Computer Science 2024-11-12 Zeyd Boukhers , AmeerAli Khan , Qusai Ramadan , Cong Yang

Supervised machine learning-based medical image computing applications necessitate expert label curation, while unlabelled image data might be relatively abundant. Active learning methods aim to prioritise a subset of available image data…

In-context learning (ICL) is an emerging capability of large autoregressive language models where a few input-label demonstrations are appended to the input to enhance the model's understanding of downstream NLP tasks, without directly…

Computation and Language · Computer Science 2023-10-31 Zhuocheng Gong , Jiahao Liu , Qifan Wang , Jingang Wang , Xunliang Cai , Dongyan Zhao , Rui Yan

While the automatic recognition of musical instruments has seen significant progress, the task is still considered hard for music featuring multiple instruments as opposed to single instrument recordings. Datasets for polyphonic instrument…

Information Retrieval · Computer Science 2019-07-10 Siddharth Gururani , Mohit Sharma , Alexander Lerch

Heart sound diagnosis and classification play an essential role in detecting cardiovascular disorders, especially when the remote diagnosis becomes standard clinical practice. Most of the current work is designed for single category based…

Sound · Computer Science 2022-04-25 Li Guo , Steven Davenport , Yonghong Peng

We introduce a dataset for evidence/rationale extraction on an extreme multi-label classification task over long medical documents. One such task is Computer-Assisted Coding (CAC) which has improved significantly in recent years, thanks to…

Computation and Language · Computer Science 2023-07-11 Hua Cheng , Rana Jafari , April Russell , Russell Klopfer , Edmond Lu , Benjamin Striner , Matthew R. Gormley

Many real-world applications adopt multi-label data streams as the need for algorithms to deal with rapidly changing data increases. Changes in data distribution, also known as concept drift, cause the existing classification models to…

Machine Learning · Computer Science 2022-02-02 Ege Berkay Gulcan , Fazli Can

Learning to represent free text is a core task in many clinical machine learning (ML) applications, as clinical text contains observations and plans not otherwise available for inference. State-of-the-art methods use large language models…

Computation and Language · Computer Science 2023-01-30 Lecheng Kong , Christopher King , Bradley Fritz , Yixin Chen

The rapid increase in the number of Computed Tomography (CT) scan examinations has created an urgent need for automated tools, such as organ segmentation, anomaly classification, and report generation, to assist radiologists with their…

Computer Vision and Pattern Recognition · Computer Science 2025-12-29 Theo Di Piazza , Carole Lazarus , Olivier Nempont , Loic Boussel

This study investigates the feasibility of automating clinical coding in Russian, a language with limited biomedical resources. We present a new dataset for ICD coding, which includes diagnosis fields from electronic health records (EHRs)…