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Over the past two decades, a series of works have aimed at studying the problem of genome assembly: the process of reconstructing a genome from sequence reads. An early formulation of the genome assembly problem showed that genome…

Genomics · Quantitative Biology 2013-12-30 Henry Lin

Conventional retrieval-augmented neural machine translation (RANMT) systems leverage bilingual corpora, e.g., translation memories (TMs). Yet, in many settings, monolingual corpora in the target language are often available. This work…

Computation and Language · Computer Science 2025-10-02 Maxime Bouthors , Josep Crego , François Yvon

In a Bayesian context, prior specification for inference on monotone densities is conceptually straightforward, but proving posterior convergence theorems is complicated by the fact that desirable prior concentration properties often are…

Statistics Theory · Mathematics 2020-07-28 Ryan Martin

Transformer architectures are increasingly effective at processing and generating very long chunks of texts, opening new perspectives for document-level machine translation (MT). In this work, we challenge the ability of MT systems to…

Computation and Language · Computer Science 2025-04-29 Ziqian Peng , Rachel Bawden , François Yvon

Trees can accelerate queries that search or aggregate values over large collections. They achieve this by storing metadata that enables quick pruning (or inclusion) of subtrees when predicates on that metadata can prove that none (or all)…

Mixture of Experts (MoE) are successful models for modeling heterogeneous data in many statistical learning problems including regression, clustering and classification. Generally fitted by maximum likelihood estimation via the well-known…

Machine Learning · Statistics 2018-10-30 Faicel Chamroukhi , Bao-Tuyen Huynh

Transformer models gain popularity because of their superior inference accuracy and inference throughput. However, the transformer is computation-intensive, causing a long inference time. The existing works on transformer inference…

Performance · Computer Science 2023-04-19 Yuan Feng , Hyeran Jeon , Filip Blagojevic , Cyril Guyot , Qing Li , Dong Li

The problem of landmark recognition has achieved excellent results in small-scale datasets. When dealing with large-scale retrieval, issues that were irrelevant with small amount of data, quickly become fundamental for an efficient…

Computer Vision and Pattern Recognition · Computer Science 2018-06-18 Federico Magliani , Tomaso Fontanini , Andrea Prati

We present an optimal data structure for submatrix maximum queries in n x n Monge matrices. Our result is a two-way reduction showing that the problem is equivalent to the classical predecessor problem in a universe of polynomial size. This…

Data Structures and Algorithms · Computer Science 2017-12-27 Pawel Gawrychowski , Shay Mozes , Oren Weimann

Efficient approximation lies at the heart of large-scale machine learning problems. In this paper, we propose a novel, robust maximum entropy algorithm, which is capable of dealing with hundreds of moments and allows for computationally…

Machine Learning · Statistics 2019-06-05 Diego Granziol , Binxin Ru , Stefan Zohren , Xiaowen Doing , Michael Osborne , Stephen Roberts

The most common ways to explore latent document dimensions are topic models and clustering methods. However, topic models have several drawbacks: e.g., they require us to choose the number of latent dimensions a priori, and the results are…

Computation and Language · Computer Science 2022-10-27 Tommaso Fornaciari , Dirk Hovy , Federico Bianchi

Uniform sampling on implicitly defined manifolds is a core primitive in motion planning, constrained simulation, and probabilistic machine learning. MASEM addresses this problem by entropy-maximizing resampling, but its resampling weights…

Methodology · Statistics 2026-05-26 Serhii Zabolotnii

In this paper, we propose an intuitive, training-free and label-free method for intent clustering in conversational search. Current approaches to short text clustering use LLM-generated pseudo-labels to enrich text representations or to…

Computation and Language · Computer Science 2026-02-26 I-Fan Lin , Faegheh Hasibi , Suzan Verberne

The Matrix-based Renyi's entropy enables us to directly measure information quantities from given data without the costly probability density estimation of underlying distributions, thus has been widely adopted in numerous statistical…

Machine Learning · Statistics 2022-05-17 Yuxin Dong , Tieliang Gong , Shujian Yu , Chen Li

Point-of-Interest (POI) recommender systems play a vital role in people's lives by recommending unexplored POIs to users and have drawn extensive attention from both academia and industry. Despite their value, however, they still suffer…

Information Retrieval · Computer Science 2019-05-31 Xiao Zhou , Cecilia Mascolo , Zhongxiang Zhao

This paper proposes a constrained maximum likelihood estimator for sequential search models, using the MPEC (Mathematical Programming with Equilibrium Constraints) approach. This method enhances numerical accuracy while avoiding ad hoc…

Econometrics · Economics 2024-09-09 Shinji Koiso , Suguru Otani

We give improved multi-pass streaming algorithms for the problem of maximizing a monotone or arbitrary non-negative submodular function subject to a general $p$-matchoid constraint in the model in which elements of the ground set arrive one…

Data Structures and Algorithms · Computer Science 2021-02-22 Chien-Chung Huang , Theophile Thiery , Justin Ward

We live in a period where bio-informatics is rapidly expanding, a significant quantity of genomic data has been produced as a result of the advancement of high-throughput genome sequencing technology, raising concerns about the costs…

Quantitative Methods · Quantitative Biology 2023-03-10 Mehedi Hasan Sarkar , Adnan Ferdous Ashrafi

Recent large language models (LLMs) have demonstrated exceptional performance on general-purpose text embedding tasks. While dense embeddings have dominated related research, we introduce the first lexicon-based embeddings (LENS) leveraging…

Computation and Language · Computer Science 2026-03-20 Yibin Lei , Tao Shen , Yu Cao , Andrew Yates

The Entity Set Expansion (ESE) task aims to expand a handful of seed entities with new entities belonging to the same semantic class. Conventional ESE methods are based on mono-modality (i.e., literal modality), which struggle to deal with…

Computation and Language · Computer Science 2023-07-28 Yangning Li , Tingwei Lu , Yinghui Li , Tianyu Yu , Shulin Huang , Hai-Tao Zheng , Rui Zhang , Jun Yuan
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