English
Related papers

Related papers: Reconstruction of gene regulatory network via spar…

200 papers

Dynamic network reconstruction has been shown to be challenging due to the requirements on sparse network structures and network identifiability. The direct parametric method (e.g., using ARX models) requires a large amount of parameters in…

Systems and Control · Computer Science 2018-11-22 Zuogong Yue , Johan Thunberg , Lennart Ljung , Jorge Goncalves

This article proposes diffusion LMS strategies for distributed estimation over adaptive networks that are able to exploit sparsity in the underlying system model. The approach relies on convex regularization, common in compressive sensing,…

Machine Learning · Computer Science 2015-06-05 Paolo Di Lorenzo , Ali H. Sayed

We propose a stochastic variance reduced optimization algorithm for solving sparse learning problems with cardinality constraints. Sufficient conditions are provided, under which the proposed algorithm enjoys strong linear convergence…

Machine Learning · Computer Science 2017-12-27 Xingguo Li , Raman Arora , Han Liu , Jarvis Haupt , Tuo Zhao

Consider a collection of competing machine learning algorithms. Given their performance on a benchmark of datasets, we would like to identify the best performing algorithm. Specifically, which algorithm is most likely to rank highest on a…

Machine Learning · Computer Science 2025-08-08 Amichai Painsky

In this paper, we consider the problem of collaboratively estimating the sparsity pattern of a sparse signal with multiple measurement data in distributed networks. We assume that each node makes Compressive Sensing (CS) based measurements…

Information Theory · Computer Science 2012-11-29 Thakshila Wimalajeewa , Pramod K. Varshney

We consider designing a robust structured sparse sensing matrix consisting of a sparse matrix with a few non-zero entries per row and a dense base matrix for capturing signals efficiently We design the robust structured sparse sensing…

Signal Processing · Electrical Eng. & Systems 2019-02-06 Tao Hong , Xiao Li , Zhihui Zhu , Qiuwei Li

Most artificial networks today rely on dense representations, whereas biological networks rely on sparse representations. In this paper we show how sparse representations can be more robust to noise and interference, as long as the…

Machine Learning · Computer Science 2019-04-03 Subutai Ahmad , Luiz Scheinkman

Engineering biology requires precise control of biomolecular circuits, and Cybergenetics is the field dedicated to achieving this goal. A significant challenge in developing controllers for cellular functions is designing systems that can…

Quantitative Methods · Quantitative Biology 2024-09-18 Hamza Faquir , Manuel Pájaro , Irene Otero-Muras

It is widely acknowledged that the performance of Transformer models is logarithmically related to their number of parameters and computational complexity. While approaches like Mixture of Experts (MoE) decouple parameter count from…

Machine Learning · Computer Science 2025-02-07 Zihao Huang , Qiyang Min , Hongzhi Huang , Defa Zhu , Yutao Zeng , Ran Guo , Xun Zhou

This paper proposes a new method to reverse engineer gene regulatory networks from experimental data. The modeling framework used is time-discrete deterministic dynamical systems, with a finite set of states for each of the variables. The…

Quantitative Methods · Quantitative Biology 2007-05-23 Reinhard Laubenbacher , Brandilyn Stigler

In this paper, we investigate the problem of optimization multivariate performance measures, and propose a novel algorithm for it. Different from traditional machine learning methods which optimize simple loss functions to learn prediction…

Machine Learning · Computer Science 2015-08-03 Jiachen Yanga , Zhiyong Dinga , Fei Guoa , Huogen Wanga , Nick Hughesb

Long Short-Term Memory (LSTM) has achieved state-of-the-art performances on a wide range of tasks. Its outstanding performance is guaranteed by the long-term memory ability which matches the sequential data perfectly and the gating…

Neural and Evolutionary Computing · Computer Science 2019-01-29 Shiwei Liu , Decebal Constantin Mocanu , Mykola Pechenizkiy

We consider the problem of signal reconstruction for a system under sparse signal corruption by a malicious agent. The reconstruction problem follows the standard error coding problem that has been studied extensively in the literature. We…

Optimization and Control · Mathematics 2023-04-28 Yu Zheng , Olugbenga Moses Anubi , Lalit Mestha , Hema Achanta

This paper focuses on the development of novel greedy techniques for distributed learning under sparsity constraints. Greedy techniques have widely been used in centralized systems due to their low computational requirements and at the same…

Information Theory · Computer Science 2015-06-23 Symeon Chouvardas , Gerasimos Mileounis , Nicholas Kalouptsidis , Sergios Theodoridis

Deep neural networks with lots of parameters are typically used for large-scale computer vision tasks such as image classification. This is a result of using dense matrix multiplications and convolutions. However, sparse computations are…

Computer Vision and Pattern Recognition · Computer Science 2016-11-22 Suraj Srinivas , Akshayvarun Subramanya , R. Venkatesh Babu

We consider the problem of estimating the parameters of a Gaussian or binary distribution in such a way that the resulting undirected graphical model is sparse. Our approach is to solve a maximum likelihood problem with an added l_1-norm…

Artificial Intelligence · Computer Science 2007-07-06 Onureena Banerjee , Laurent El Ghaoui , Alexandre d'Aspremont

We introduce a pruning algorithm that provably sparsifies the parameters of a trained model in a way that approximately preserves the model's predictive accuracy. Our algorithm uses a small batch of input points to construct a data-informed…

Machine Learning · Computer Science 2021-03-16 Cenk Baykal , Lucas Liebenwein , Igor Gilitschenski , Dan Feldman , Daniela Rus

Sparse recovery is one of the most fundamental and well-studied inverse problems. Standard statistical formulations of the problem are provably solved by general convex programming techniques and more practical, fast (nearly-linear time)…

Data Structures and Algorithms · Computer Science 2022-03-09 Jonathan A. Kelner , Jerry Li , Allen Liu , Aaron Sidford , Kevin Tian

Many regression and classification procedures fit a parameterized function $f(x;w)$ of predictor variables $x$ to data $\{x_{i},y_{i}\}_1^N$ based on some loss criterion $L(y,f)$. Often, regularization is applied to improve accuracy by…

Machine Learning · Computer Science 2021-07-16 Gilmer Valdes , Wilmer Arbelo , Yannet Interian , Jerome H. Friedman

In networked control systems, communication resource constraints often necessitate the use of \emph{sparse} control input vectors. A prototypical problem is how to ensure controllability of a linear dynamical system when only a limited…

Systems and Control · Electrical Eng. & Systems 2025-06-24 Krishna Praveen V. S. Kondapi , Chandrasekhar Sriram , Geethu Joseph , Chandra R. Murthy