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An evolutionary tree is a cascade of bifurcations starting from a single common root, generating a growing set of daughter species as time goes by. Species here is a general denomination for biological species, spoken languages or any other…

Quantitative Methods · Quantitative Biology 2013-08-26 Paulo Murilo Castro de Oliveira

We construct a tree-based dependence structure for the representation of binomial, Poisson and Gaussian random vectors having a given covariance matrix, using sums of independent random variables. This construction allows us to characterize…

Probability · Mathematics 2016-05-17 Bünyamin Kızıldemir , Nicolas Privault

We obtain a generating function for the degree sequences and colors of rooted multipartite labeled series-reduced trees. As an application of this result, we determine the number of symbolic ultrametrics (introduced by B\"ocker and Dress)…

Combinatorics · Mathematics 2025-12-22 Medet Jumadildayev

In this paper we define some new labellings for trees, called the in-improper and out-improper odd-graceful labellings such that some trees labelled with the new labellings can induce graceful graphs having at least a cycle. We, next, apply…

Discrete Mathematics · Computer Science 2015-12-31 Hongyu Wang , Jin Xu , Bing Yao

Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

Quantitative Methods · Quantitative Biology 2016-03-08 Cedric Chauve , Julien Courtiel , Yann Ponty

To a definable subset of Z_p^n (or to a scheme of finite type over Z_p) one can associate a tree in a natural way. It is known that the corresponding Poincare series P(X) = \sum_i N_i X^i is rational, where N_i is the number of nodes of the…

Algebraic Geometry · Mathematics 2010-09-20 Immanuel Halupczok

We consider extremal problems related to decks and multidecks of rooted binary trees (a.k.a. rooted phylogenetic tree shapes). Here, the deck (resp. multideck) of a tree $T$ refers to the set (resp. multiset) of leaf induced binary subtrees…

We present a surprisingly new connection between two well-studied combinatorial classes: rooted connected chord diagrams on one hand, and rooted bridgeless combinatorial maps on the other hand. We describe a bijection between these two…

Combinatorics · Mathematics 2017-10-18 Julien Courtiel , Karen Yeats , Noam Zeilberger

The use of machine learning algorithms in finance, medicine, and criminal justice can deeply impact human lives. As a consequence, research into interpretable machine learning has rapidly grown in an attempt to better control and fix…

Machine Learning · Computer Science 2021-02-02 Thibaut Vidal , Toni Pacheco , Maximilian Schiffer

The class of self-nested trees presents remarkable compression properties because of the systematic repetition of subtrees in their structure. In this paper, we provide a better combinatorial characterization of this specific family of…

Data Structures and Algorithms · Computer Science 2018-10-26 Romain Azaïs , Jean-Baptiste Durand , Christophe Godin

The purpose of this paper is to analyze certain statistics of a recently introduced non-uniform random tree model, biased recursive trees. This model is based on constructing a random tree by establishing a correspondence with non-uniform…

Probability · Mathematics 2018-01-16 Ella Hiesmayr , Ümit Işlak

We consider so-called simple families of labelled trees, which contain, e.g., ordered, unordered, binary and cyclic labelled trees as special instances, and study the global and local behaviour of the number of inversions. In particular we…

Combinatorics · Mathematics 2011-01-26 Alois Panholzer , Georg Seitz

In analogy to other concepts of a similar nature, we define the inducibility of a rooted binary tree. Given a fixed rooted binary tree $B$ with $k$ leaves, we let $\gamma(B,T)$ be the proportion of all subsets of $k$ leaves in $T$ that…

Combinatorics · Mathematics 2016-01-27 Éva Czabarka , László A. Székely , Stephan Wagner

The problem of enumerating meanders -- pairs of simple plane curves with transverse intersections -- was formulated about forty years ago and is still far from solved. Recently, it was discovered that meanders admit a factorization into…

Combinatorics · Mathematics 2026-03-26 Yury Belousov

We establish counting formulas and bijections for deformations of the braid arrangement. Precisely, we consider real hyperplane arrangements such that all the hyperplanes are of the form $x\_i-x\_j=s$ for some integer $s$. Classical…

Combinatorics · Mathematics 2021-06-15 Olivier Bernardi

In 1981, Andr\'e Joyal provided a combinatorial interpretation of the algebra of formal power series, a central gadget in the toolkit of enumerative combinatorics. In Joyal's theory of species of structures, combinatorial species (like…

Combinatorics · Mathematics 2023-06-07 Arthur Gonçalves Fidalgo

This paper presents a unified approach to parsing, in which top-down, bottom-up and left-corner parsers are related to preorder, postorder and inorder tree traversals. It is shown that the simplest bottom-up and left-corner parsers are left…

cmp-lg · Computer Science 2008-02-03 Dale Gerdemann

We present new links between some remarkable martingales found in the study of the Binary Search Tree, or of the Bisection Problem, looking at them on the probability space of a continuous time binary branching process.

Probability · Mathematics 2007-05-23 B. Chauvin , A. Rouault

Given an undirected graph representing similarities between a set of items and an additive measure evaluating the items, we treat the position of a special subset of items in an ordinal ranking through a collection of combinatorial…

Data Structures and Algorithms · Computer Science 2026-05-05 Samuel Boardman

Tree sets are abstract structures that can be used to model various tree-shaped objects in combinatorics. Finite tree sets can be represented by finite graph-theoretical trees. We extend this representation theory to infinite tree sets.…

Combinatorics · Mathematics 2025-05-16 J. Pascal Gollin , Jay Lilian Kneip