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With the completion of human genome mapping, the focus of scientists seeking to explain the biological complexity of living systems is shifting from analyzing the individual components (such as a particular gene or biochemical reaction) to…

Molecular Networks · Quantitative Biology 2010-01-28 Sitabhra Sinha , T Jesan , Nivedita Chatterjee

Statistical physics can describe the behavior of microbial populations consisting of many heterogeneous individuals. A direct consequence is the existence of phase transitions, where the behavior of a population changes discontinuously upon…

Populations and Evolution · Quantitative Biology 2026-04-20 Kaan Öcal , Syrine Ghrabli , Michael P. H. Stumpf

Spectral behaviors of photonic resonators have been the basis for a range of fundamental studies, with applications in classical and quantum technologies. Driven nonlinear resonators provide a fertile ground for phenomena related to phase…

We propose a theoretical and computational approach to investigate temporal behavior of a nonlinear polarization in perturbative regime induced by an intense and ultrashort pulsed electric field. First-principles time-dependent density…

Optics · Physics 2019-03-27 Mitsuharu Uemoto , Yuki Kuwabara , Shunsuke A. Sato , Kazuhiro Yabana

The initiation of directional cell motion requires symmetry breaking that can happen both with or without external stimuli. During cell crawling, forces generated by the cytoskeleton and their transmission through mechanosensitive adhesions…

Cell Behavior · Quantitative Biology 2023-06-02 Yuzhu Chen , David Saintillan , Padmini Rangamani

Single-molecule biophysics has transformed our understanding of the fundamental molecular processes involved in living biological systems, but also of the fascinating physics of life. Far more exotic than a collection of exemplars of soft…

Biological Physics · Physics 2017-09-08 Helen Miller , Zhaokun Zhou , Jack Shepherd , Adam J. M. Wollman , Mark C. Leake

This paper has been temporarily withdrawn. Highly nonlinear dependences of 4He 2^3S - 2^3P lines on pressure were observed in vapor cell saturation spectroscopy. Line shifts agree with those expected from light-pressure-induced perturbation…

Atomic Physics · Physics 2007-05-23 T. Zelevinsky

The self-organization of proteins into enriched compartments and the formation of complex patterns are crucial processes for life on the cellular level. Liquid-liquid phase separation is one mechanism for forming such enriched compartments.…

Soft Condensed Matter · Physics 2025-04-07 Antonia Winter , Yuhao Liu , Alexander Ziepke , George Dadunashvili , Erwin Frey

We present a field theory to describe the composition of a surface spontaneously exchanging matter with its bulk environment. By only assuming matter conservation in the system, we show with extensive numerical simulations that, depending…

Biological Physics · Physics 2023-08-09 Nirvana Caballero , Karsten Kruse , Thierry Giamarchi

This article presents a biological neural network model driven by inhomogeneous Poisson processes accounting for the intrinsic randomness of synapses. The main novelty is the introduction of local interactions: each firing neuron triggers…

Probability · Mathematics 2021-08-17 Maximiliano Altamirano , Roberto Cortez , Matthieu Jonckheere , Lasse Leskelä

We study a stochastic process describing the continuous time evolution of the membrane potentials of finite system of neurons in the absence of external stimuli. The values of the membrane potentials evolve under the effect of {\it chemical…

Probability · Mathematics 2017-07-14 Aline Duarte , Guilherme Ost

We analytically and numerically study the temporal intensity pattern emerging from the linear or nonlinear evolutions of a single or double phase jump in an optical fiber. The results are interpreted in terms of interferences of the…

Optics · Physics 2020-07-07 Anastasiia Sheveleva , Christophe Finot

A wide variety of biological as well as non-biological processes and phenomena involving ion channels, binding, pH, folding/unfolding and effects of chain length are well represented by multiphasic profiles, a series of straight lines…

Biological Physics · Physics 2015-12-08 Per Nissen

An important idea in neural information processing is the communication-through-coherence hypothesis, according to which communication between two brain regions is effective only if they are phase-locked. Also of importance is neuronal…

Spontaneous parametric down-conversion is a well-known process in quantum nonlinear optics in which a photon incident on a nonlinear crystal spontaneously splits into two photons. Here we propose an analogous physical process where one…

Water molecules play an important role in providing unique environments for biological reactions on cell membranes. It is widely believed that water molecules form bridges that connect lipid molecules and stabilize cell membranes. Using…

Biological Physics · Physics 2014-08-04 Eiji Yamamoto , Takuma Akimoto , Masato Yasui , Kenji Yasuoka

We explore nonreciprocal vibration transmission in a nonlinear periodic waveguide. Nonlinearity and asymmetry, the two necessary requirements for nonreciprocity, are both introduced within the unit cell of the periodic waveguide. We focus…

Pattern Formation and Solitons · Physics 2025-10-20 Ali Kogani , Behrooz Yousefzadeh

Understanding and exploiting the dynamics of complex nonlinear systems is nowadays at the core of a broad range of scientific and technological endeavors. Within the optical domain, light evolution in a nonlinear multimode environment…

We investigate the macroscopic effects of the ingredients that drive the origin of species through sympatric speciation. In our model, sympatric speciation is obtained as we tune up the strength of competition between individuals with…

Populations and Evolution · Quantitative Biology 2009-11-13 K. Luz-Burgoa , S. Moss de Oliveira , Veit Schwämmle , J. S. Sá Martins

When a fluid comprised of multiple phases or constituents flows through a network, non-linear phenomena such as multiple stable equilibrium states and spontaneous oscillations can occur. Such behavior has been observed or predicted in a…

Fluid Dynamics · Physics 2015-06-05 Casey M. Karst , Brian D. Storey , John B. Geddes