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Modeling of work systems occurs for all sorts of reasons. Requirements need to be expressed. A pre-existing situation may need to be charted and analyzed. Early design decisions may be captured using architecture principles. Detailed design…

Software Engineering · Computer Science 2021-05-19 Henderik A. Proper

Many fields of science rely on relational database management systems to analyze, publish and share data. Since RDBMS are originally designed for, and their development directions are primarily driven by, business use cases they often lack…

Databases · Computer Science 2013-08-08 László Dobos , Alexander S. Szalay , Tamás Budavári , István Csabai , Nolan Li

Like other types of computational research, modeling and simulation of biological processes (biomodels) is still largely communicated without sufficient detail to allow independent reproduction of results. But reproducibility in this area…

Other Quantitative Biology · Quantitative Biology 2023-04-19 Pedro Mendes

With the advantages that cloud computing offers in terms of platform as a service, software as a service, and infrastructure as a service, data engineers and data scientists are able to leverage cloud computing for their ETL/ELT (extract,…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-09-01 Mohammad Rehman , Hairong Wang

Simulations with high accuracy are an essential part of scientific research to accelerate the innovation process. They are especially useful for finding novel approaches or optimizing existing methods. Today, powerful software tools are…

Medical Physics · Physics 2022-08-31 Patrick Vogel , Martin A. Rückert , Thomas Kampf , Volker C. Behr

Workflow support typically focuses on single simulation experiments. This is also the case for simulation based on finite element methods. If entire simulation studies shall be supported, flexible means for intertwining revising the model,…

Computational Engineering, Finance, and Science · Computer Science 2020-10-16 Andreas Ruscheinski , Pia Wilsdorf , Julius Zimmermann , Ursula van Rienen , Adelinde M. Uhrmacher

Unsupervised machine learning is widely used to mine large, unlabeled datasets to make data-driven discoveries in critical domains such as climate science, biomedicine, astronomy, chemistry, and more. However, despite its widespread…

Machine Learning · Computer Science 2025-06-06 Andersen Chang , Tiffany M. Tang , Tarek M. Zikry , Genevera I. Allen

The integration of machine learning techniques in materials discovery has become prominent in materials science research and has been accompanied by an increasing trend towards open-source data and tools to propel the field. Despite the…

Materials Science · Physics 2026-05-27 Daniel Persaud , Logan Ward , Jason Hattrick-Simpers

Modern science clearly demands for a higher level of reproducibility and collaboration. To make research fully reproducible one has to take care of several aspects: research protocol description, data access, environment preservation,…

Computers and Society · Computer Science 2017-12-06 Andrey Ustyuzhanin , Timothy Daniel Head , Igor Babuschkin , Alexander Tiunov

Reproducibility and comparability of empirical results are at the core tenet of the scientific method in any scientific field. To ease reproducibility of empirical studies, several benchmarks in software engineering research, such as…

Software Engineering · Computer Science 2021-04-01 José Campos , André Souto

Many algorithms in workflow scheduling and resource provisioning rely on the performance estimation of tasks to produce a scheduling plan. A profiler that is capable of modeling the execution of tasks and predicting their runtime…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-03-01 Muhammad H. Hilman , Maria A. Rodriguez , Rajkumar Buyya

Cloud platforms allow users to execute tasks directly from their web browser and are a key enabling technology not only for commerce but also for computational science. Research software is often developed by scientists with limited…

Scientific workflows are widely used to automate scientific data analysis and often involve processing large quantities of data on compute clusters. As such, their execution tends to be long-running and resource intensive, leading to…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-20 Kathleen West , Fabian Lehmann , Vasilis Bountris , Ulf Leser , Yehia Elkhatib , Lauritz Thamsen

The Workflows Community Summit gathered 111 participants from 18 countries to discuss emerging trends and challenges in scientific workflows, focusing on six key areas: time-sensitive workflows, AI-HPC convergence, multi-facility workflows,…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-10-22 Rafael Ferreira da Silva , Deborah Bard , Kyle Chard , Shaun de Witt , Ian T. Foster , Tom Gibbs , Carole Goble , William Godoy , Johan Gustafsson , Utz-Uwe Haus , Stephen Hudson , Shantenu Jha , Laila Los , Drew Paine , Frédéric Suter , Logan Ward , Sean Wilkinson , Marcos Amaris , Yadu Babuji , Jonathan Bader , Riccardo Balin , Daniel Balouek , Sarah Beecroft , Khalid Belhajjame , Rajat Bhattarai , Wes Brewer , Paul Brunk , Silvina Caino-Lores , Henri Casanova , Daniela Cassol , Jared Coleman , Taina Coleman , Iacopo Colonnelli , Anderson Andrei Da Silva , Daniel de Oliveira , Pascal Elahi , Nour Elfaramawy , Wael Elwasif , Brian Etz , Thomas Fahringer , Wesley Ferreira , Rosa Filgueira , Jacob Fosso Tande , Luiz Gadelha , Andy Gallo , Daniel Garijo , Yiannis Georgiou , Philipp Gritsch , Patricia Grubel , Amal Gueroudji , Quentin Guilloteau , Carlo Hamalainen , Rolando Hong Enriquez , Lauren Huet , Kevin Hunter Kesling , Paula Iborra , Shiva Jahangiri , Jan Janssen , Joe Jordan , Sehrish Kanwal , Liliane Kunstmann , Fabian Lehmann , Ulf Leser , Chen Li , Peini Liu , Jakob Luettgau , Richard Lupat , Jose M. Fernandez , Ketan Maheshwari , Tanu Malik , Jack Marquez , Motohiko Matsuda , Doriana Medic , Somayeh Mohammadi , Alberto Mulone , John-Luke Navarro , Kin Wai Ng , Klaus Noelp , Bruno P. Kinoshita , Ryan Prout , Michael R. Crusoe , Sashko Ristov , Stefan Robila , Daniel Rosendo , Billy Rowell , Jedrzej Rybicki , Hector Sanchez , Nishant Saurabh , Sumit Kumar Saurav , Tom Scogland , Dinindu Senanayake , Woong Shin , Raul Sirvent , Tyler Skluzacek , Barry Sly-Delgado , Stian Soiland-Reyes , Abel Souza , Renan Souza , Domenico Talia , Nathan Tallent , Lauritz Thamsen , Mikhail Titov , Benjamin Tovar , Karan Vahi , Eric Vardar-Irrgang , Edite Vartina , Yuandou Wang , Merridee Wouters , Qi Yu , Ziad Al Bkhetan , Mahnoor Zulfiqar

Modern research in the sciences, engineering, humanities, and other fields depends on software, and specifically, research software. Much of this research software is developed in universities, by faculty, postdocs, students, and staff. In…

Software Engineering · Computer Science 2019-06-04 Daniel S. Katz , Kenton McHenry , Caleb Reinking , Robert Haines

Scientific workflow management systems (SWMSs) and resource managers together ensure that tasks are scheduled on provisioned resources so that all dependencies are obeyed, and some optimization goal, such as makespan minimization, is…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-07-17 Fabian Lehmann , Jonathan Bader , Friedrich Tschirpke , Lauritz Thamsen , Ulf Leser

The rapid growth of scientific software has created practical barriers for bioinformatics research. Although powerful statistical, artificial intelligence (AI)-based methods are now widely available, their effective use is often hindered by…

Software Engineering · Computer Science 2026-04-24 Simon Süwer , Zoe Chervontseva , Kester Bagemihl , Jan Baumbach , Olga Tsoy , Andreas Maier

Effective use of parallel and distributed computing in science depends upon multiple interdependent entities and activities that form an ecosystem. Active engagement between application users and technology catalysts is a crucial activity…

Software Engineering · Computer Science 2013-09-10 Ketan Maheshwari , David Kelly , Scott J. Krieder , Justin M. Wozniak , Daniel S. Katz , Mei Zhi-Gang , Mainak Mookherjee

Modern research heavily relies on software. A significant challenge researchers face is understanding the complex software used in specific research fields. We target two scenarios in this context, namely long onboarding times for newcomers…

Software Engineering · Computer Science 2026-04-14 Adrian Bajraktari , Andreas Vogelsang

In Earth Systems Science, many complex data pipelines combine different data sources and apply data filtering and analysis steps. Typically, such data analysis processes are historically grown and implemented with many sequentially executed…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-07-19 Jonathan Bader , Kevin Styp-Rekowski , Leon Doehler , Soeren Becker , Odej Kao