Related papers: Parametric Fermat-Weber and tropical supertrees
Fermat-Weber points with respect to an asymmetric tropical distance function are studied. It turns out that they correspond to the optimal solutions of a transportation problem. The results are applied to obtain a new method for computing…
We study the geometry of tropical Fermat--Weber points, that is, optimal solutions to a location problem over a projective space using a dissimilarity measure derived from the tropical metric. It is well-known that for a given sample, such…
In a metric space, the Fermat-Weber points of a sample are statistics to measure the central tendency of the sample and it is well-known that the Fermat-Weber point of a sample is not necessarily unique in the metric space. We investigate…
We extend reconstruction methods for phylogenetic trees to ultrametrics of arbitrary matroids and study the stability of these data analysis methods in the combinatorial spirit of Andreas Dress. In particular, we generalize Atteson's work…
The asymmetric tropical distance is a distance measure on the tropical torus $\mathbb{R}^n/\mathbb{R}\mathbf{1}$ and in particular on the Bergman fan $B(K_N) \subseteq \mathbb{R}^{\binom{N}{2}}/\mathbb{R}\mathbf{1}$ of the complete…
Phylogenetic trees are the fundamental mathematical representation of evolutionary processes in biology. They are also objects of interest in pure mathematics, such as algebraic geometry and combinatorics, due to their discrete geometry.…
Let $\mathbf{v}_1,\ldots,\mathbf{v}_m$ be points in a metric space with distance $d$, and let $w_1,\ldots,w_m$ be positive real weights. The weighted Fermat-Weber points are those points $\mathbf{x}$ which minimize $\sum w_i d(\mathbf{v}_i,…
A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phylogenetics is to combine such trees into larger trees, called…
When we apply comparative phylogenetic analyses to genome data, it is a well-known problem and challenge that some of given species (or taxa) often have missing genes. In such a case, we have to impute a missing part of a gene tree from a…
The problem of comparing probability distributions is at the heart of many tasks in statistics and machine learning. Established comparison methods treat the standard setting that the distributions are supported in the same space. Recently,…
Tropical geometry with the max-plus algebra has been applied to statistical learning models over tree spaces because geometry with the tropical metric over tree spaces has some nice properties such as convexity in terms of the tropical…
The presence of reticulate evolutionary events in phylogenies turn phylogenetic trees into phylogenetic networks. These events imply in particular that there may exist multiple evolutionary paths from a non-extant species to an extant one,…
In the tropical projective torus, it is not guaranteed that the projection of a Fermat-Weber point of a given data set is a Fermat-Weber point of the projection of the data set. In this paper, we focus on the projection on the tropical…
Ultametrics are an important class of distances used in applications such as phylogenetics, clustering and classification theory. Ultrametrics are essentially distances that can be represented by an edge-weighted rooted tree so that all of…
We study the geometry of metrics and convexity structures on the space of phylogenetic trees, which is here realized as the tropical linear space of all \ ultrametrics. The ${\rm CAT}(0)$-metric of Billera-Holmes-Vogtman arises from the…
We study the behavior of phylogenetic tree shapes in the tropical geometric interpretation of tree space. Tree shapes are formally referred to as tree topologies; a tree topology can also be thought of as a tree combinatorial type, which is…
We investigate uniqueness issues that arise in $l^\infty$-optimization to linear spaces and Bergman fans of matroids. For linear spaces, we give a polyhedral decomposition of $\mathbb{R}^n$ based on the dimension of the set of…
The notion of geometric construction is introduced. This notion allows to compare incidence configurations in the algebraic and tropical plane. We provide an algorithm such that, given a tropical instance of a geometric construction, it…
We study the problem of optimal transport in tropical geometry and define the Wasserstein-$p$ distances in the continuous metric measure space setting of the tropical projective torus. We specify the tropical metric -- a combinatorial…
Given a matroid M on the ground set E, the Bergman fan B(M), or space of M-ultrametrics, is a polyhedral complex in R^E which arises in several different areas, such as tropical algebraic geometry, dynamical systems, and phylogenetics.…