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In this chapter, I review the main methods and techniques of complex systems science. As a first step, I distinguish among the broad patterns which recur across complex systems, the topics complex systems science commonly studies, the tools…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Cosma Rohilla Shalizi

Predicting the structure of multi-protein complexes is a grand challenge in biochemistry, with major implications for basic science and drug discovery. Computational structure prediction methods generally leverage pre-defined structural…

Biomolecules · Quantitative Biology 2021-01-26 Stephan Eismann , Raphael J. L. Townshend , Nathaniel Thomas , Milind Jagota , Bowen Jing , Ron O. Dror

In recent years, machine learning has demonstrated impressive capability in handling molecular science tasks. To support various molecular properties at scale, machine learning models are trained in the multi-task learning paradigm.…

Machine Learning · Computer Science 2024-10-15 Yuxuan Ren , Dihan Zheng , Chang Liu , Peiran Jin , Yu Shi , Lin Huang , Jiyan He , Shengjie Luo , Tao Qin , Tie-Yan Liu

This book dwells on mathematical and algorithmic issues of data analysis based on generality order of descriptions and respective precision. To speak of these topics correctly, we have to go some way getting acquainted with the important…

Logic in Computer Science · Computer Science 2019-08-30 Sergei O. Kuznetsov

Data-driven models are central to scientific discovery. In efforts to achieve state-of-the-art model accuracy, researchers are employing increasingly complex machine learning algorithms that often outperform simple regressions in…

Materials Science · Physics 2022-12-21 Eric S. Muckley , James E. Saal , Bryce Meredig , Christopher S. Roper , John H. Martin

We discuss Hamiltonian learning in quantum field theories as a protocol for systematically extracting the operator content and coupling constants of effective field theory Hamiltonians from experimental data. Learning the Hamiltonian for…

The minimal memory required to model a given stochastic process - known as the statistical complexity - is a widely adopted quantifier of structure in complexity science. Here, we ask if quantum mechanics can fundamentally change the…

Quantum Physics · Physics 2017-08-28 Whei Yeap Suen , Jayne Thompson , Andrew J. P. Garner , Vlatko Vedral , Mile Gu

The first step in the construction of a regression model or a data-driven analysis, aiming to predict or elucidate the relationship between the atomic scale structure of matter and its properties, involves transforming the Cartesian…

Existing procedures for model validation have been deemed inadequate for many engineering systems. The reason of this inadequacy is due to the high degree of complexity of the mechanisms that govern these systems. It is proposed in this…

Artificial Intelligence · Computer Science 2007-05-23 A. Guergachi

Computational models pervade all branches of the exact sciences and have in recent times also started to prove to be of immense utility in some of the traditionally 'soft' sciences like ecology, sociology and politics. This volume is a…

The use of machine learning to develop intelligent software tools for interpretation of radiology images has gained widespread attention in recent years. The development, deployment, and eventual adoption of these models in clinical…

Machine Learning · Computer Science 2021-02-04 Viraj Kulkarni , Manish Gawali , Amit Kharat

In this paper, a mathematical theory of learning is proposed that has many parallels with information theory. We consider Vapnik's General Setting of Learning in which the learning process is defined to be the act of selecting a hypothesis…

Machine Learning · Computer Science 2014-05-08 Ibrahim Alabdulmohsin

Machine learning (ML)-accelerated discovery requires large amounts of high-fidelity data to reveal predictive structure-property relationships. For many properties of interest in materials discovery, the challenging nature and high cost of…

Chemical Physics · Physics 2021-11-04 Aditya Nandy , Chenru Duan , Heather J. Kulik

The concept of quantum complexity has far-reaching implications spanning theoretical computer science, quantum many-body physics, and high energy physics. The quantum complexity of a unitary transformation or quantum state is defined as the…

High Energy Physics - Theory · Physics 2021-08-02 Fernando G. S. L. Brandão , Wissam Chemissany , Nicholas Hunter-Jones , Richard Kueng , John Preskill

Besides their intrinsic nuclear-structure value, nuclear mass models are essential for astrophysical applications, such as r-process nucleosynthesis and neutron-star structure. To overcome the intrinsic limitations of existing…

Nuclear Theory · Physics 2016-01-25 R. Utama , J. Piekarewicz , H. B. Prosper

Can we learn more from data than existed in the generating process itself? Can new and useful information be constructed from merely applying deterministic transformations to existing data? Can the learnable content in data be evaluated…

Machine Learning · Computer Science 2026-03-17 Marc Finzi , Shikai Qiu , Yiding Jiang , Pavel Izmailov , J. Zico Kolter , Andrew Gordon Wilson

Existing work on understanding deep learning often employs measures that compress all data-dependent information into a few numbers. In this work, we adopt a perspective based on the role of individual examples. We introduce a measure of…

Machine Learning · Computer Science 2021-06-21 Robert J. N. Baldock , Hartmut Maennel , Behnam Neyshabur

Fermions are fundamental particles which obey seemingly bizarre quantum-mechanical principles, yet constitute all the ordinary matter that we inhabit. As such, their study is heavily motivated from both fundamental and practical incentives.…

Quantum Physics · Physics 2023-12-19 Andrew Zhao

The main question is: why and how can we ever predict based on a finite sample? The question is not answered by statistical learning theory. Here, I suggest that prediction requires belief in "predictability" of the underlying dependence,…

Machine Learning · Computer Science 2022-01-28 Marina Sapir

We present a computational approach to infinite nuclear matter employing Hartree-Fock theory, many-body perturbation theory and coupled cluster theory. These lectures are closely linked with those of chapters 9, 10 and 11 and serve as input…

Nuclear Theory · Physics 2017-06-28 Justin Lietz , Sam Novario , Gustav R. Jansen , Gaute Hagen , Morten Hjorth-Jensen
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