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We study a generic program to investigate the scope for automatically customising it for a vital current task, which was not considered when it was first written. In detail, we show genetic programming (GP) can evolve models of aspects of…

Neural and Evolutionary Computing · Computer Science 2013-06-25 W. B. Langdon , M. Harman

Program synthesis is the process of generating a computer program following a set of specifications, which can be a high-level description of the problem and/or a set of input-output examples. The synthesis can be modeled as a search…

Neural and Evolutionary Computing · Computer Science 2023-04-07 Matheus Campos Fernandes , Fabrício Olivetti de França , Emilio Francesquini

Interrogation of biological pathways is an integral part of omics data analysis. Large language models (LLMs) enable the generation of custom pathways and gene sets tailored to specific scientific questions. These targeted sets are…

The structural identifiability and the observability of a model determine the possibility of inferring its parameters and states by observing its outputs. These properties should be analysed before attempting to calibrate a model.…

Systems and Control · Electrical Eng. & Systems 2022-10-18 Xabier Rey Barreiro , Alejandro F. Villaverde

This paper describes Postfix-GP system, postfix notation based Genetic Programming (GP), for solving symbolic regression problems. It presents an object-oriented architecture of Postfix-GP framework. It assists the user in understanding of…

Neural and Evolutionary Computing · Computer Science 2015-07-08 Vipul K. Dabhi , Sanjay Chaudhary

PiML (read $\pi$-ML, /`pai`em`el/) is an integrated and open-access Python toolbox for interpretable machine learning model development and model diagnostics. It is designed with machine learning workflows in both low-code and high-code…

Machine Learning · Computer Science 2023-12-21 Agus Sudjianto , Aijun Zhang , Zebin Yang , Yu Su , Ningzhou Zeng

The techniques of data-driven backmapping from coarse-grained (CG) to fine-grained (FG) representation often struggle with accuracy, unstable training, and physical realism, especially when applied to complex systems such as proteins. In…

Machine Learning · Computer Science 2025-05-26 Georgios Kementzidis , Erin Wong , John Nicholson , Ruichen Xu , Yuefan Deng

The effectiveness of the machine learning methods for real-world tasks depends on the proper structure of the modeling pipeline. The proposed approach is aimed to automate the design of composite machine learning pipelines, which is…

Here we propose an evolutionary algorithm that self modifies its operators at the same time that candidate solutions are evolved. This tackles convergence and lack of diversity issues, leading to better solutions. Operators are represented…

Neural and Evolutionary Computing · Computer Science 2017-12-19 Andres Felipe Cruz Salinas , Jonatan Gomez Perdomo

Gaussian processes (GPs) are pervasive in functional data analysis, machine learning, and spatial statistics for modeling complex dependencies. Modern scientific data sets are typically heterogeneous and often contain multiple known…

Methodology · Statistics 2021-10-19 Didong Li , Andrew Jones , Sudipto Banerjee , Barbara E. Engelhardt

When learning simulations for modeling physical phenomena in industrial designs, geometrical variabilities are of prime interest. While classical regression techniques prove effective for parameterized geometries, practical scenarios often…

Machine Learning · Computer Science 2023-10-24 Fabien Casenave , Brian Staber , Xavier Roynard

Recently, more and more works have proposed to drive evolutionary algorithms using machine learning models.Usually, the performance of such model based evolutionary algorithms is highly dependent on the training qualities of the adopted…

Neural and Evolutionary Computing · Computer Science 2020-04-08 Cheng He , Shihua Huang , Ran Cheng , Kay Chen Tan , Yaochu Jin

Gaussian Processes (GPs) provide a powerful framework for making predictions and understanding uncertainty for classification with kernels and Bayesian non-parametric learning. Building such models typically requires strong prior knowledge…

Machine Learning · Computer Science 2024-08-16 Changze Huang , Di Wang

Efficient high-performance libraries often expose multiple tunable parameters to provide highly optimized routines. These can range from simple loop unroll factors or vector sizes all the way to algorithmic changes, given that some…

Performance · Computer Science 2022-02-22 Marco Cianfriglia , Flavio Vella , Cedric Nugteren , Anton Lokhmotov , Grigori Fursin

In this paper, we present the first-of-its-kind machine learning (ML) system, called AI Programmer, that can automatically generate full software programs requiring only minimal human guidance. At its core, AI Programmer uses genetic…

Artificial Intelligence · Computer Science 2017-09-19 Kory Becker , Justin Gottschlich

Recently, increasing works have proposed to drive evolutionary algorithms using machine learning models. Usually, the performance of such model based evolutionary algorithms is highly dependent on the training qualities of the adopted…

Neural and Evolutionary Computing · Computer Science 2020-05-12 Cheng He , Shihua Huang , Ran Cheng , Kay Chen Tan , Yaochu Jin

For many linear and nonlinear systems that arise from the discretization of partial differential equations the construction of an efficient multigrid solver is a challenging task. Here we present a novel approach for the optimization of…

Numerical Analysis · Mathematics 2019-10-09 Jonas Schmitt , Sebastian Kuckuk , Harald Köstler

We present a Python package together with a practical guide for the implementation of a lightweight diversity-enhanced genetic algorithm (GA) approach for the exploration of multi-dimensional parameter spaces. Searching a parameter space…

Neural and Evolutionary Computing · Computer Science 2024-12-24 Jonas Wessén , Eliel Camargo-Molina

Galaxy morphological classification is a fundamental aspect of galaxy formation and evolution studies. Various machine learning tools have been developed for automated pipeline analysis of large-scale surveys, enabling a fast search for…

Instrumentation and Methods for Astrophysics · Physics 2022-06-15 Yash Gondhalekar , Rafael S. de Souza , Ana L. Chies-Santos

Architecture optimization is the process of automatically generating design options, typically to enhance software's quantifiable quality attributes, such as performance and reliability. Multi-objective optimization approaches have been…

Software Engineering · Computer Science 2024-01-31 Daniele Di Pompeo , Michele Tucci