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Elastic distances like dynamic time warping (DTW) are central to time series machine learning because they compare sequences under local temporal misalignment. Soft-DTW is an adaptation of DTW that can be used as a gradient-based loss by…

Machine Learning · Computer Science 2026-05-04 Christopher Holder , Anthony Bagnall

Transformer models rely heavily on the scaled dot-product attention (SDPA) operation, typically implemented as FlashAttention. Characterized by its frequent interleaving of matrix multiplications and softmax operations, FlashAttention fails…

Hardware Architecture · Computer Science 2025-12-09 Jiawei Lin , Yuanlong Li , Guokai Chen , Thomas Bourgeat

Recurrent Neural Networks (RNNs) are vital for sequential data processing. Long Short-Term Memory Autoencoders (LSTM-AEs) are particularly effective for unsupervised anomaly detection in time-series data. However, inherent sequential…

Hardware Architecture · Computer Science 2026-03-17 Aimilios Leftheriotis , Dimosthenis Masouros , Dimitrios Soudris , George Theodoridis

The memory capacity in edge devices is often limited due to constraints on cost, size, and power. Consequently, memory competition leads to inevitable page swapping in memory-constrained mixed-criticality edge devices, causing slow storage…

Operating Systems · Computer Science 2025-11-26 Meng-Chia Lee , Wen Sheng Lim , Yuan-Hao Chang , Tei-Wei Kuo

Time-series anomaly detection is critical for ensuring safety in high-stakes applications, where robustness is a fundamental requirement rather than a mere performance metric. Addressing the vulnerability of these systems to adversarial…

Machine Learning · Computer Science 2026-05-11 Shijie Liu , Tansu Alpcan , Christopher Leckie , Sarah Erfani

We present softdtw-cuda-torch, an open-source PyTorch library for computing Soft Dynamic Time Warping (SoftDTW) on GPUs. Our implementation addresses three key limitations of existing GPU implementations of SoftDTW: a hard sequence-length…

Machine Learning · Computer Science 2026-02-20 Ron Shapira Weber , Oren Freifeld

Carbon isotope labeling method is a standard metabolic engineering tool for flux quantification in living cells. To cope with the high dimensionality of isotope labeling systems, diverse algorithms have been developed to reduce the number…

Molecular Networks · Quantitative Biology 2022-02-11 Quentin Thommen , Julien Hurbain , Benjamin Pfeuty

We propose deterministic timed automata (DTA) as a model-independent language for specifying performance and dependability measures over continuous-time stochastic processes. Technically, these measures are defined as limit frequencies of…

Systems and Control · Computer Science 2015-03-17 Tomáš Brázdil , Jan Krčál , Jan Křetínský , Antonín Kučera , Vojtěch Řehák

Modern transformer-based deep neural networks present unique technical challenges for effective acceleration in real-world applications. Apart from the vast amount of linear operations needed due to their sizes, modern transformer models…

Hardware Architecture · Computer Science 2024-11-07 Jiajun Wu , Mo Song , Jingmin Zhao , Yizhao Gao , Jia Li , Hayden Kwok-Hay So

Static timing analysis (STA) is crucial for Electronic Design Automation (EDA) flows but remains a computational bottleneck. While existing GPU-based STA engines are faster than CPU, they suffer from inefficiencies, particularly intra-warp…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-03-31 En-Ming Huang , Shih-Hao Hung

As AI-based applications become pervasive, CPU vendors are starting to incorporate matrix engines within the datapath to boost efficiency. Systolic arrays have been the premier architectural choice as matrix engines in offload accelerators.…

Hardware Architecture · Computer Science 2021-10-06 Geonhwa Jeong , Eric Qin , Ananda Samajdar , Christopher J. Hughes , Sreenivas Subramoney , Hyesoon Kim , Tushar Krishna

Raw signal genome analysis (RSGA) has emerged as a promising approach to enable real-time genome analysis by directly analyzing raw electrical signals. However, rapid advancements in sequencing technologies make it increasingly difficult…

Dynamic time warping distance (DTW) is a widely used distance measure between time series. The best known algorithms for computing DTW run in near quadratic time, and conditional lower bounds prohibit the existence of significantly faster…

Data Structures and Algorithms · Computer Science 2019-05-27 William Kuszmaul

A cornerstone of the smart grid is the advanced monitorability on its assets and operations. Increasingly pervasive installation of the phasor measurement units (PMUs) allows the so-called synchrophasor measurements to be taken roughly 100…

Applications · Statistics 2017-08-17 Robert Qiu , Lei Chu , Xing He , Zenan Ling , Haichun Liu

Accurate and efficient multivariate time series (MTS) analysis is increasingly critical for a wide range of intelligent applications. Within this realm, Transformers have emerged as the predominant architecture due to their strong ability…

Machine Learning · Computer Science 2026-05-19 Rui An , Haohao Qu , Wenqi Fan , Xuequn Shang , Qing Li

During the last decades, international attempts have been made to develop realistic space weather prediction tools aiming to forecast the conditions on the Sun and in the interplanetary environment. These efforts have led to the development…

Efficient execution of parameter sensitivity analysis (SA) is critical to allow for its routinely use. The pathology image processing application investigated in this work processes high-resolution whole-slide cancer tissue images from…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-11-01 Eduardo Scartezini , Willian Barreiros , Tahsin Kurc , Jun Kong , Alba C. M. A. Melo , Joel Saltz , George Teodoro

Reverse time migration (RTM) is an algorithm widely used in the oil and gas industry to process seismic data. It is a computationally intensive task that suits well in parallel computers. Methods such as RTM can be parallelized in shared…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-08-14 Ítalo A. S. Assis , João B. Fernandes , Tiago Barros , Samuel Xavier-de-Souza

Time series classification is an important data mining task that has received a lot of interest in the past two decades. Due to the label scarcity in practice, semi-supervised time series classification with only a few labeled samples has…

Machine Learning · Computer Science 2023-09-08 Wenjie Xi , Arnav Jain , Li Zhang , Jessica Lin

Recently, tensor algebra have witnessed significant applications across various domains. Each operator in tensor algebra features different computational workload and precision. However, current general accelerators, such as VPU, GPGPU, and…

Hardware Architecture · Computer Science 2024-05-06 Chenyang Ai , Lechuan Zhao , Zhijie Huang , Cangyuan Li , Xinan Wang , Ying Wang