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We define the ``shift-match number'' for a binary string and we compute the probability of occurrence of a given string as a subsequence in longer strings in terms of its shift-match number. We thus prove that the string matching…

Genomics · Quantitative Biology 2007-05-23 A. H. Bilge , A. Erzan , D. Balcan

Strings form a fundamental data type in computer systems. String searching has been extensively studied since the inception of computer science. Increasingly many applications have to deal with imprecise strings or strings with fuzzy…

Databases · Computer Science 2015-09-30 Sharma V. Thankachan , Manish Patil , Rahul Shah , Sudip Biswas

We consider the problem of estimating the probability of an observed string drawn i.i.d. from an unknown distribution. The key feature of our study is that the length of the observed string is assumed to be of the same order as the size of…

Information Theory · Computer Science 2007-07-13 Aaron B. Wagner , Pramod Viswanath , Sanjeev R. Kulkarni

The problem addressed concerns the determination of the average number of successive attempts of guessing a word of a certain length consisting of letters with given probabilities of occurrence. Both first- and second-order approximations…

Information Theory · Computer Science 2015-06-19 Kerstin Andersson

When considering binary strings, it's natural to wonder how many distinct subsequences might exist in a given string. Given that there is an existing algorithm which provides a straightforward way to compute the number of distinct…

Combinatorics · Mathematics 2023-06-22 Yonah Biers-Ariel , Anant Godbole , Elizabeth Kelley

String matching algorithm plays the vital role in the Computational Biology. The functional and structural relationship of the biological sequence is determined by similarities on that sequence. For that, the researcher is supposed to aware…

Data Structures and Algorithms · Computer Science 2014-01-30 Pandiselvam. P , Marimuthu. T , Lawrance. R

Computing string or sequence alignments is a classical method of comparing strings and has applications in many areas of computing, such as signal processing and bioinformatics. Semi-local string alignment is a recent generalisation of this…

Data Structures and Algorithms · Computer Science 2009-03-23 Peter Krusche , Alexander Tiskin

We address the problem of counting the number of strings in a collection where a given pattern appears, which has applications in information retrieval and data mining. Existing solutions are in a theoretical stage. We implement these…

Data Structures and Algorithms · Computer Science 2015-10-02 Travis Gagie , Aleksi Hartikainen , Juha Kärkkäinen , Gonzalo Navarro , Simon J. Puglisi , Jouni Sirén

The distribution of frequency counts of distinct words by length in a language's vocabulary will be analyzed using two methods. The first, will look at the empirical distributions of several languages and derive a distribution that…

Computation and Language · Computer Science 2012-07-17 Reginald D. Smith

We develop a likelihood methodology which can be used to search for evidence of burst repetition in the BATSE catalog, and to study the properties of the repetition signal. We use a simplified model of burst repetition in which a number…

Astrophysics · Physics 2009-10-28 Carlo Graziani , Donald Q. Lamb

We study the complexity of the problem of searching for a set of patterns that separate two given sets of strings. This problem has applications in a wide variety of areas, most notably in data mining, computational biology, and in…

Computational Complexity · Computer Science 2016-12-20 Giuseppe Lancia , Luke Mathieson , Pablo Moscato

Given the vast reservoirs of data stored worldwide, efficient mining of data from a large information store has emerged as a great challenge. Many databases like that of intrusion detection systems, web-click records, player statistics,…

Databases · Computer Science 2010-03-09 Sourav Dutta , Arnab Bhattacharya

Numbers and numerical vectors account for a large portion of data. However, recently the amount of string data generated has increased dramatically. Consequently, classifying string data is a common problem in many fields. The most widely…

Machine Learning · Statistics 2016-02-24 Hitoshi Koyano , Morihiro Hayashida , Tatsuya Akutsu

Compression of integer sets and sequences has been extensively studied for settings where elements follow a uniform probability distribution. In addition, methods exist that exploit clustering of elements in order to achieve higher…

Information Theory · Computer Science 2014-02-11 N. Jesper Larsson

We consider string matching with variable length gaps. Given a string $T$ and a pattern $P$ consisting of strings separated by variable length gaps (arbitrary strings of length in a specified range), the problem is to find all ending…

Data Structures and Algorithms · Computer Science 2011-10-14 Philip Bille , Inge Li Goertz , Hjalte Wedel Vildhøj , David Kofoed Wind

Simulation-based inference plays a major role in modern statistics, and often employs either reallocating (as in a randomization test) or resampling (as in bootstrapping). Reallocating mimics random allocation to treatment groups, while…

Statistics Theory · Mathematics 2017-08-08 Kari Lock Morgan

The estimated accuracy of a classifier is a random quantity with variability. A common practice in supervised machine learning, is thus to test if the estimated accuracy is significantly better than chance level. This method of signal…

Methodology · Statistics 2020-01-28 Jonathan D. Rosenblatt , Yuval Benjamini , Roee Gilron , Roy Mukamel , Jelle J. Goeman

We determine the average number of distinct subsequences in a random binary string, and derive an estimate for the average number of distinct subsequences of a particular length.

Combinatorics · Mathematics 2013-10-29 Michael J. Collins

Conventional statistics begins with a model, and assigns a likelihood of obtaining any particular set of data. The opposite approach, beginning with the data and assigning a likelihood to any particular model, is explored here for the case…

Data Analysis, Statistics and Probability · Physics 2009-10-30 Timothy E. Holy

We say a string has a cadence if a certain character is repeated at regular intervals, possibly with intervening occurrences of that character. We call the cadence anchored if the first interval must be the same length as the others. We…

Data Structures and Algorithms · Computer Science 2016-10-12 Amihood Amir , Alberto Apostolico , Travis Gagie , Gad M. Landau
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