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Topological data analysis (TDA) is an emerging technique for biological signal processing. TDA leverages the invariant topological features of signals in a metric space for robust analysis of signals even in the presence of noise. In this…

Algebraic Topology · Mathematics 2024-01-11 Shashank Manjunath , Jose A. Perea , Aarti Sathyanarayana

Voxel hierarchy on dynamic brain graphs is produced by k core percolation on functional dynamic amplitude correlation of resting-state fMRI. Directed graphs and their afferent/efferent capacities are produced by Markov modeling of the…

Neurons and Cognition · Quantitative Biology 2024-06-13 Dong Soo Lee , Hyun Joo Kim , Youngmin Huh , Yeon Koo Kang , Wonseok Whi , Hyekyoung Lee , Hyejin Kang

This paper explores a novel method for anxiety detection in older adults using simple wristband sensors such as Electrodermal Activity (EDA) and Photoplethysmogram (PPG) and a context-based feature. The proposed method for anxiety detection…

Signal Processing · Electrical Eng. & Systems 2021-06-08 Rajdeep Kumar Nath , Himanshu Thapliyal

Representation and classification of Electroencephalography (EEG) brain signals are critical processes for their analysis in cognitive tasks. Particularly, extraction of discriminative features from raw EEG signals, without any…

Machine Learning · Computer Science 2019-05-01 Emad-ul-Haq Qazi , Muhammad Hussain , Hatim Aboalsamh

Task-based functional magnetic resonance imaging (task fMRI) is a non-invasive technique that allows identifying brain regions whose activity changes when individuals are asked to perform a given task. This contributes to the understanding…

A brain microstate is characterized by a unique, fixed spatial distribution of electrically active neurons with time varying amplitude. It is hypothesized that a microstate implements a functional/physiological state of the brain during…

The development of foundation models for brain MRI depends critically on the scale, diversity, and consistency of available data, yet systematic assessments of these factors remain scarce. In this study, we analyze 54 publicly accessible…

Computer Vision and Pattern Recognition · Computer Science 2025-10-24 Minh Sao Khue Luu , Margaret V. Benedichuk , Ekaterina I. Roppert , Roman M. Kenzhin , Bair N. Tuchinov

We present a method to discover differences between populations with respect to the spatial coherence of their oriented white matter microstructure in arbitrarily shaped white matter regions. This method is applied to diffusion MRI scans of…

Cascading large-amplitude bursts in neural activity, termed avalanches, are thought to provide insight into the complex spatially distributed interactions in neural systems. In human neuroimaging, for example, avalanches occurring during…

Neurons and Cognition · Quantitative Biology 2021-07-28 Kanika Bansal , Javier O. Garcia , Nina Lauharatanahirun , Sarah F. Muldoon , Paul Sajda , Jean M. Vettel

Understanding brain dynamics is important for neuroscience and mental health. Functional magnetic resonance imaging (fMRI) enables the measurement of neural activities through blood-oxygen-level-dependent (BOLD) signals, which represent…

Neurons and Cognition · Quantitative Biology 2025-06-16 Yifei Sun , Daniel Chahine , Qinghao Wen , Tianming Liu , Xiang Li , Yixuan Yuan , Fernando Calamante , Jinglei Lv

In our research, we attempt to help people recognize their brain state of concentration or relaxation more conveniently and in real time. Considering the inconvenience of wearing traditional multiple electrode electroencephalographs, we…

Human-Computer Interaction · Computer Science 2015-09-28 Zhen Li , Jianjun Xu , Tingshao Zhu

Dynamic networks have been increasingly used to characterize brain connectivity that varies during resting and task states. In such characterizations, a connectivity network is typically measured at each time point for a subject over a…

Methodology · Statistics 2023-03-23 Maoyu Zhang , Biao Cai , Wenlin Dai , Dehan Kong , Hongyu Zhao , Jingfei Zhang

We analyze the connectivity structure of weighted brain networks extracted from spontaneous magnetoencephalographic (MEG) signals of healthy subjects and epileptic patients (suffering from absence seizures) recorded at rest. We find that,…

Data Analysis, Statistics and Probability · Physics 2011-01-21 M. Chavez , M. Valencia , V. Navarro , V. Latora , J. Martinerie

The functional network approach, where fMRI BOLD time series are mapped to networks depicting functional relationships between brain areas, has opened new insights into the function of the human brain. In this approach, the choice of…

Neurons and Cognition · Quantitative Biology 2017-11-10 Onerva Korhonen , Heini Saarimäki , Enrico Glerean , Mikko Sams , Jari Saramäki

We study the distribution of brain source from the most advanced brain imaging technique, Magnetoencephalography (MEG), which measures the magnetic fields outside the human head produced by the electrical activity inside the brain. Common…

Applications · Statistics 2019-08-13 Zhigang Yao , Zengyan Fan , Masahito Hayashi , William F. Eddy

Topological Data Analysis (TDA) is increasingly crucial in investigating the shape of complex data structures across scientific fields, particularly in neuroscience and finance. This study delves into persistent homology, a TDA component…

Physics and Society · Physics 2024-09-17 Roel Gisolf , Fernando A. N. Santos , Felix Wierstra

Multivoxel pattern analysis (MVPA) has gained enormous popularity in the neuroimaging community over the past few years. At the group level, most MVPA studies adopt an "information based" approach in which the sign of the effect of…

Quantitative Methods · Quantitative Biology 2016-09-07 Roee Gilron , Jonathan Rosenblatt , Oluwasanmi Koyejo , Russell A. Poldrack , Roy Mukamel

A method of data assimilation (DA) is employed to estimate electrophysiological parameters of neurons simultaneously with their synaptic connectivity in a small model biological network. The DA procedure is cast as an optimization, with a…

Neurons and Cognition · Quantitative Biology 2020-02-05 Eve Armstrong

Cognitive load assessment is crucial for understanding human performance in various domains. This study investigates the impact of different task conditions and time constraints on cognitive load using multiple measures, including…

Human-Computer Interaction · Computer Science 2023-12-19 Arash Abbasi Larki , Akram Shojaei , Mehdi Delrobaei

Magnetoencephalography and electroencephalography (M/EEG) are non-invasive modalities that measure the weak electromagnetic fields generated by neural activity. Estimating the location and magnitude of the current sources that generated…

Machine Learning · Statistics 2019-10-16 Hicham Janati , Thomas Bazeille , Bertrand Thirion , Marco Cuturi , Alexandre Gramfort
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