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With the rapid increase in the amount of public code repositories, developers maintain a great desire to retrieve precise code snippets by using natural language. Despite existing deep learning based approaches(e.g., DeepCS and MMAN) have…

Software Engineering · Computer Science 2021-10-19 Chen Zeng , Yue Yu , Shanshan Li , Xin Xia , Zhiming Wang , Mingyang Geng , Bailin Xiao , Wei Dong , Xiangke Liao

This paper presents several algorithms for hashing directed graphs. The algorithms given are capable of hashing entire graphs as well as assigning hash values to specific nodes in a given graph. The notion of node symmetry is made precise…

Discrete Mathematics · Computer Science 2023-06-21 Caleb Helbling

We investigate the problem of producing structured graph representations of visual scenes. Our work analyzes the role of motifs: regularly appearing substructures in scene graphs. We present new quantitative insights on such repeated…

Computer Vision and Pattern Recognition · Computer Science 2018-03-30 Rowan Zellers , Mark Yatskar , Sam Thomson , Yejin Choi

Attributed graphs model real networks by enriching their nodes with attributes accounting for properties. Several techniques have been proposed for partitioning these graphs into clusters that are homogeneous with respect to both semantic…

Social and Information Networks · Computer Science 2017-08-29 Alessandro Baroni , Alessio Conte , Maurizio Patrignani , Salvatore Ruggieri

GitHub repositories consist of various detailed information about the project contributors, the number of commits and its contributors, releases, pull requests, programming languages, and issues. However, no systematic dataset of open…

Software Engineering · Computer Science 2020-12-08 Shreyansh Surana , Smit Detroja , Saurabh Tiwari

The success of graph embeddings or node representation learning in a variety of downstream tasks, such as node classification, link prediction, and recommendation systems, has led to their popularity in recent years. Representation learning…

Machine Learning · Computer Science 2018-09-07 Saba A. Al-Sayouri , Danai Koutra , Evangelos E. Papalexakis , Sarah S. Lam

Motivation: Sequence mapping is the cornerstone of modern genomics. However, most existing sequence mapping algorithms are insufficiently general. Results: We introduce context schemes: a method that allows the unambiguous recognition of a…

Genomics · Quantitative Biology 2015-08-28 Adam Novak , Yohei Rosen , David Haussler , Benedict Paten

As graph analytics often involves compute-intensive operations, GPUs have been extensively used to accelerate the processing. However, in many applications such as social networks, cyber security, and fraud detection, their representative…

Data Structures and Algorithms · Computer Science 2018-06-28 Mo Sha , Yuchen Li , Bingsheng He , Kian-Lee Tan

The comparison and alignment of runtime traces are essential, e.g., for semantic analysis or debugging. However, naive sequence alignment algorithms cannot address the needs of the modern web: (i) the bytecode generation process of V8 is…

Networking and Internet Architecture · Computer Science 2019-10-17 Javier Cabrera-Arteaga , Martin Monperrus , Benoit Baudry

There is an increasing interest in executing complex analyses over large graphs, many of which require processing a large number of multi-hop neighborhoods or subgraphs. Examples include ego network analysis, motif counting, personalized…

Databases · Computer Science 2015-10-01 Abdul Quamar , Amol Deshpande , Jimmy Lin

Neural networks that compute over graph structures are a natural fit for problems in a variety of domains, including natural language (parse trees) and cheminformatics (molecular graphs). However, since the computation graph has a different…

Neural and Evolutionary Computing · Computer Science 2017-02-23 Moshe Looks , Marcello Herreshoff , DeLesley Hutchins , Peter Norvig

We survey graph reachability indexing techniques for efficient processing of graph reachability queries in two types of popular graph models: plain graphs and edge-labeled graphs. Reachability queries are Boolean in nature, determining…

Databases · Computer Science 2025-07-01 Chao Zhang , Angela Bonifati , M. Tamer Özsu

We introduce graphcodes, a novel multi-scale summary of the topological properties of a dataset that is based on the well-established theory of persistent homology. Graphcodes handle datasets that are filtered along two real-valued scale…

Algebraic Topology · Mathematics 2024-05-24 Michael Kerber , Florian Russold

Design patterns are elegant and well-tested solutions to recurrent software development problems. They are the result of software developers dealing with problems that frequently occur, solving them in the same or a slightly adapted way. A…

Software Engineering · Computer Science 2019-03-25 Hannes Thaller , Lukas Linsbauer , Alexander Egyed

Subgraph reconfiguration is a family of problems focusing on the reachability of the solution space in which feasible solutions are subgraphs, represented either as sets of vertices or sets of edges, satisfying a prescribed graph structure…

Data Structures and Algorithms · Computer Science 2018-03-19 Tesshu Hanaka , Takehiro Ito , Haruka Mizuta , Benjamin Moore , Naomi Nishimura , Vijay Subramanya , Akira Suzuki , Krishna Vaidyanathan

Graph-based code indexing can improve context retrieval for LLM-based code agents by preserving call chains and dependency relationships that keyword search and similarity retrieval often miss. ABCoder is an open-source framework that…

Software Engineering · Computer Science 2026-04-22 Junsong Pu , Yichen Li , Zhuangbin Chen

Inspired by the success of foundation models in applications such as ChatGPT, as graph data has been ubiquitous, one can envision the far-reaching impacts that can be brought by Graph Foundation Models (GFMs) with broader applications in…

Machine Learning · Computer Science 2024-11-12 Zehong Wang , Zheyuan Zhang , Nitesh V Chawla , Chuxu Zhang , Yanfang Ye

Graph rewriting is a popular tool for the optimisation and modification of graph expressions in domains such as compilers, machine learning and quantum computing. The underlying data structures are often port graphs - graphs with labels at…

Data Structures and Algorithms · Computer Science 2025-03-27 Luca Mondada , Pablo Andrés-Martínez

App reviews reflect various user requirements that can aid in planning maintenance tasks. Recently, proposed approaches for automatically classifying user reviews rely on machine learning algorithms. A previous study demonstrated that…

Software Engineering · Computer Science 2025-07-15 Yasaman Abedini , Abbas Heydarnoori

Most real-world graphs are dynamic in nature, with continuous and rapid updates to the graph topology, and vertex and edge properties. Such frequent updates pose significant challenges for inferencing over Graph Neural Networks (GNNs).…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-12-09 Pranjal Naman , Yogesh Simmhan