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We analyze numerical approximation of the fractional elliptic problem $L^{\beta}u=f$, ${\beta>0}$, where $L$ is a second-order self-adjoint elliptic operator with homogeneous Dirichlet or Neumann boundary conditions. The paper develops a…

Numerical Analysis · Mathematics 2026-05-13 Kelvin J. R. Almeida-Sousa , David Bolin , Alexandre B. Simas

The immersed boundary (IB) method is a general mathematical framework for studying problems involving fluid-structure interactions in which an elastic structure is immersed in a viscous incompressible fluid. In the IB formulation, the fluid…

Numerical Analysis · Mathematics 2020-10-01 Yuanxun Bao , Alexander D. Kaiser , Jason Kaye , Charles S. Peskin

The reduction algorithms for functional determinants of differential operators on spacetime manifolds of different topological types are presented, which were recently used for the calculation of the no-boundary wavefunction and the…

General Relativity and Quantum Cosmology · Physics 2009-10-22 A. O. Barvinsky

Hamiltonian systems of ordinary and partial differential equations are fundamental mathematical models spanning virtually all physical scales. A critical property for the robustness and stability of computational methods in such systems is…

Quantum Physics · Physics 2025-02-25 Hsuan-Cheng Wu , Xiantao Li

This library (collection of subroutines) is presented for calculating standard quantities in the decomposition of many-electron matrix elements in atomic structure theory. These quantities include the coefficients of fractional parentage,…

Atomic Physics · Physics 2007-05-23 G. Gaigalas

In our previous work [arXiv:2202.10042], the complexity of Sinkhorn iteration is reduced from $O(N^2)$ to the optimal $O(N)$ by leveraging the special structure of the kernel matrix. In this paper, we explore the special structure of kernel…

Optimization and Control · Mathematics 2022-06-22 Qichen Liao , Zihao Wang , Jing Chen , Bo Bai , Shi Jin , Hao Wu

Domain specific (dis-)similarity or proximity measures used e.g. in alignment algorithms of sequence data, are popular to analyze complex data objects and to cover domain specific data properties. Without an underlying vector space these…

Data Structures and Algorithms · Computer Science 2014-11-07 Andrej Gisbrecht , Frank-Michael Schleif

A simple MATLAB implementation of hierarchical shape functions on 2D rectangles is explained and available for download. Global shape functions are ordered for a given polynomial degree according to the indices of the nodes, edges, or…

Mathematical Software · Computer Science 2022-05-17 Alexej Moskovka , Jan Valdman

A novel compressed matrix format is proposed that combines an adaptive hierarchical partitioning of the matrix with low-rank approximation. One typical application is the approximation of discretized functions on rectangular domains; the…

Numerical Analysis · Mathematics 2021-11-05 Stefano Massei , Leonardo Robol , Daniel Kressner

In the iterative solution of dense linear systems from boundary integral equations or systems involving kernel matrices, the main challenges are the expensive matrix-vector multiplication and the storage cost which are usually tackled by…

Numerical Analysis · Mathematics 2018-11-13 Xin Xing , Edmond Chow

We derive a Fast Multipole Method (FMM) where a low-rank approximation of the kernel is obtained using the Empirical Interpolation Method (EIM). Contrary to classical interpolation-based FMM, where the interpolation points and basis are…

Numerical Analysis · Mathematics 2015-08-25 Fabien Casenave

We consider systems of nonlinear magnetostatics and quasistatics that typically arise in the modeling and simulation of electric machines. The nonlinear problems, eventually obtained after time discretization, are usually solved by…

Numerical Analysis · Mathematics 2023-11-27 Herbert Egger , Felix Engertsberger , Bogdan Radu

The solution of problems in physics is often facilitated by a change of variables. In this work we present neural transformations to learn symmetries of Hamiltonian mechanical systems. Maintaining the Hamiltonian structure requires novel…

Computational Physics · Physics 2019-06-12 Roberto Bondesan , Austen Lamacraft

Symmetric tensor operations arise in a wide variety of computations. However, the benefits of exploiting symmetry in order to reduce storage and computation is in conflict with a desire to simplify memory access patterns. In this paper, we…

Numerical Analysis · Mathematics 2014-10-21 Martin D. Schatz , Tze Meng Low , Robert A. van de Geijn , Tamara G. Kolda

In this paper, we present the general theory of embedding independence tests on Hilbert spaces that generalizes the concepts of distance covariance, distance multivariance and HSIC. This is done by defining new types of kernel on an $n$…

Functional Analysis · Mathematics 2024-11-14 Jean Carlo Guella

A double-atom partitioning of the molecular one-electron density matrix is used to describe atoms and bonds. All calculations are performed in Hilbert space. The concept of atomic weight functions (familiar from Hirshfeld analysis of the…

Complexity bounds for many problems on matrices with univariate polynomial entries have been improved in the last few years. Still, for most related algorithms, efficient implementations are not available, which leaves open the question of…

Symbolic Computation · Computer Science 2019-05-14 Seung Gyu Hyun , Vincent Neiger , Éric Schost

The kernel-independent fast multipole method (KIFMM) proposed in [1] is of almost linear complexity. In the original KIFMM the time-consuming M2L translations are accelerated by FFT. However, when more equivalent points are used to achieve…

Numerical Analysis · Computer Science 2015-03-19 Yanchuang Cao , Lihua Wen , Junjie Rong

Kernel matrix-vector product is ubiquitous in many science and engineering applications. However, a naive method requires $O(N^2)$ operations, which becomes prohibitive for large-scale problems. We introduce a parallel method that provably…

Mathematical Software · Computer Science 2021-04-30 Ruoxi Wang , Chao Chen , Jonghyun Lee , Eric Darve

We expose (without proofs) a unified computational approach to integrable structures (including recursion, Hamiltonian, and symplectic operators) based on geometrical theory of partial differential equations. We adopt a coordinate based…

Exactly Solvable and Integrable Systems · Physics 2012-07-17 Iosif Krasil'shchik , Alexander Verbovetsky , Raffaele Vitolo