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Sparse Autoencoders (SAEs) have emerged as a powerful unsupervised method for extracting sparse representations from language models, yet scalable training remains a significant challenge. We introduce a suite of 256 SAEs, trained on each…

Adapting foundation models for specific purposes has become a standard approach to build machine learning systems for downstream applications. Yet, it is an open question which mechanisms take place during adaptation. Here we develop a new…

Computer Vision and Pattern Recognition · Computer Science 2025-03-24 Hyesu Lim , Jinho Choi , Jaegul Choo , Steffen Schneider

Deep learning, particularly with the advancement of Large Language Models, has transformed biomolecular modeling, with protein language models such as ESM inspiring emerging RNA language models such as RiNALMo. Recent work has begun…

Biomolecules · Quantitative Biology 2026-05-18 Taehan Kim , Sangdae Nam

Deep Learning (DL) is a two-step classification model that consists feature learning, generating feature representations using unsupervised ways and the supervised learning stage at the last step of model using at least two hidden layers on…

Machine Learning · Computer Science 2021-01-26 Gokhan Altan , Yakup Kutlu

Semantic segmentation of electron microscopy (EM) images of biological samples remains a challenge in the life sciences. EM data captures details of biological structures, sometimes with such complexity that even human observers can find it…

Computer Vision and Pattern Recognition · Computer Science 2025-11-03 Sheida Rahnamai Kordasiabi , Damian Dalle Nogare , Florian Jug

Sparse Autoencoders (SAEs) have emerged as a popular tool for interpreting the hidden states of large language models (LLMs). By learning to reconstruct activations from a sparse bottleneck layer, SAEs discover interpretable features from…

Computer Vision and Pattern Recognition · Computer Science 2025-09-19 Matthew Lyle Olson , Musashi Hinck , Neale Ratzlaff , Changbai Li , Phillip Howard , Vasudev Lal , Shao-Yen Tseng

Explainable Artificial Intelligence (XAI) models have recently attracted a great deal of interest from a variety of application sectors. Despite significant developments in this area, there are still no standardized methods or approaches…

Machine Learning · Computer Science 2023-12-08 Sarit Maitra , Vivek Mishra , Pratima Verma , Manav Chopra , Priyanka Nath

Conventionally, autoencoders are unsupervised representation learning tools. In this work, we propose a novel discriminative autoencoder. Use of supervised discriminative learning ensures that the learned representation is robust to…

Computer Vision and Pattern Recognition · Computer Science 2019-12-30 Anupriya Gogna , Angshul Majumdar

Scene graph generation aims to produce structured representations for images, which requires to understand the relations between objects. Due to the continuous nature of deep neural networks, the prediction of scene graphs is divided into…

Computer Vision and Pattern Recognition · Computer Science 2020-08-13 Meng Wei , Chun Yuan , Xiaoyu Yue , Kuo Zhong

State of the art (SOTA) few-shot learning (FSL) methods suffer significant performance drop in the presence of domain differences between source and target datasets. The strong discrimination ability on the source dataset does not…

Computer Vision and Pattern Recognition · Computer Science 2021-09-24 Hanwen Liang , Qiong Zhang , Peng Dai , Juwei Lu

Sparse Autoencoders (SAEs) have become an important tool in mechanistic interpretability, helping to analyze internal representations in both Large Language Models (LLMs) and Vision Transformers (ViTs). By decomposing polysemantic…

Machine Learning · Computer Science 2026-05-11 Jakub Stępień , Marcin Mazur , Jacek Tabor , Przemysław Spurek

Learning sentence embeddings often requires a large amount of labeled data. However, for most tasks and domains, labeled data is seldom available and creating it is expensive. In this work, we present a new state-of-the-art unsupervised…

Computation and Language · Computer Science 2021-09-13 Kexin Wang , Nils Reimers , Iryna Gurevych

Sparse autoencoders (SAEs) are a useful tool for uncovering human-interpretable features in the activations of large language models (LLMs). While some expect SAEs to find the true underlying features used by a model, our research shows…

Machine Learning · Computer Science 2025-01-31 Gonçalo Paulo , Nora Belrose

Semantic segmentation consists in classifying each pixel of an image by assigning it to a specific label chosen from a set of all the available ones. During the last few years, a lot of attention shifted to this kind of task. Many computer…

Computer Vision and Pattern Recognition · Computer Science 2021-12-28 Loris Nanni , Daniela Cuza , Alessandra Lumini , Andrea Loreggia , Sheryl Brahnam

Zero-shot Learning (ZSL) classification categorizes or predicts classes (labels) that are not included in the training set (unseen classes). Recent works proposed different semantic autoencoder (SAE) models where the encoder embeds a visual…

Computer Vision and Pattern Recognition · Computer Science 2023-08-14 William Heyden , Habib Ullah , M. Salman Siddiqui , Fadi Al Machot

Mechanistic interpretability of large language models (LLMs) aims to uncover the internal processes of information propagation and reasoning. Sparse autoencoders (SAEs) have demonstrated promise in this domain by extracting interpretable…

Machine Learning · Computer Science 2025-05-26 Wei Shi , Sihang Li , Tao Liang , Mingyang Wan , Guojun Ma , Xiang Wang , Xiangnan He

Sparse Autoencoders (SAEs) are a powerful dictionary learning technique for decomposing neural network activations, translating the hidden state into human ideas with high semantic value despite no external intervention or guidance.…

Machine Learning · Computer Science 2025-12-17 Albert Miao , Chenliang Zhou , Jiawei Zhou , Cengiz Oztireli

Being one of the most popular generative framework, variational autoencoders(VAE) are known to suffer from a phenomenon termed posterior collapse, i.e. the latent variational distributions collapse to the prior, especially when a strong…

Machine Learning · Computer Science 2021-03-23 Renfei Tu , Yang Liu , Yongzeng Xue , Cheng Wang , Maozu Guo

Sparse autoencoders (SAEs) have become a central tool for interpreting language models. However, two key SAE analyses that remain difficult to scale are (1) matching semantically similar features across multi-layers and (2) compressing…

Machine Learning · Computer Science 2026-05-28 Tue M. Cao , Nguyen Do , My T. Thai

Current sparse autoencoder (SAE) approaches to neural network interpretability assume that activations can be decomposed through linear superposition into sparse, interpretable features. Despite high reconstruction fidelity, SAEs…

Neurons and Cognition · Quantitative Biology 2025-12-10 Omar Claflin